Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HOXD4P09016 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXD4P09016 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HOXD4P09016 MIR3180-5-201ENST00000583743 153 ntBASIC16.83■□□□□ 0.28
HOXD4P09016 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.83■□□□□ 0.28
HOXD4P09016 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HOXD4P09016 AC093458.2-201ENST00000623150 629 ntBASIC16.83■□□□□ 0.28
HOXD4P09016 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.83■□□□□ 0.28
HOXD4P09016 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXD4P09016 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HOXD4P09016 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HOXD4P09016 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
HOXD4P09016 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXD4P09016 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
HOXD4P09016 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
HOXD4P09016 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.82■□□□□ 0.28
HOXD4P09016 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HOXD4P09016 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
HOXD4P09016 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
HOXD4P09016 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.82■□□□□ 0.28
HOXD4P09016 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 AC005332.1-201ENST00000577698 1310 ntBASIC16.82■□□□□ 0.28
HOXD4P09016 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
HOXD4P09016 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.82■□□□□ 0.28
HOXD4P09016 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
HOXD4P09016 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.82■□□□□ 0.28
HOXD4P09016 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC16.82■□□□□ 0.28
HOXD4P09016 KRT18P38-201ENST00000449496 1282 ntBASIC16.82■□□□□ 0.28
HOXD4P09016 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.82■□□□□ 0.28
HOXD4P09016 VENTXP5-201ENST00000523979 775 ntBASIC16.82■□□□□ 0.28
HOXD4P09016 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.82■□□□□ 0.28
HOXD4P09016 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.82■□□□□ 0.28
HOXD4P09016 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
HOXD4P09016 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
HOXD4P09016 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.82■□□□□ 0.28
HOXD4P09016 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD4P09016 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
HOXD4P09016 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXD4P09016 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXD4P09016 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
HOXD4P09016 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXD4P09016 LINC01311-201ENST00000565162 1445 ntBASIC16.81■□□□□ 0.28
HOXD4P09016 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HOXD4P09016 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXD4P09016 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXD4P09016 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXD4P09016 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.81■□□□□ 0.28
HOXD4P09016 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.81■□□□□ 0.28
HOXD4P09016 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXD4P09016 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.81■□□□□ 0.28
HOXD4P09016 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.81■□□□□ 0.28
HOXD4P09016 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXD4P09016 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.81■□□□□ 0.28
HOXD4P09016 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
HOXD4P09016 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
HOXD4P09016 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
HOXD4P09016 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXD4P09016 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HOXD4P09016 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HOXD4P09016 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXD4P09016 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXD4P09016 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HOXD4P09016 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXD4P09016 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXD4P09016 KRT8P7-201ENST00000533003 1432 ntBASIC16.8■□□□□ 0.28
HOXD4P09016 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms