Protein–RNA interactions for Protein: O95292

VAPB, Vesicle-associated membrane protein-associated protein B/C, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPBO95292 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VAPBO95292 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.7■□□□□ 0.58
VAPBO95292 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VAPBO95292 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.69■□□□□ 0.58
VAPBO95292 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.69■□□□□ 0.58
VAPBO95292 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 AC112777.1-201ENST00000540175 1423 ntBASIC18.69■□□□□ 0.58
VAPBO95292 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.69■□□□□ 0.58
VAPBO95292 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.69■□□□□ 0.58
VAPBO95292 MIR718-201ENST00000390190 70 ntBASIC18.69■□□□□ 0.58
VAPBO95292 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.69■□□□□ 0.58
VAPBO95292 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.69■□□□□ 0.58
VAPBO95292 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.69■□□□□ 0.58
VAPBO95292 MYC-208ENST00000641036 567 ntBASIC18.69■□□□□ 0.58
VAPBO95292 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.69■□□□□ 0.58
VAPBO95292 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
VAPBO95292 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.69■□□□□ 0.58
VAPBO95292 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 GPAT2P1-201ENST00000444924 1672 ntBASIC18.69■□□□□ 0.58
VAPBO95292 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VAPBO95292 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
VAPBO95292 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VAPBO95292 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VAPBO95292 KRT8P45-201ENST00000414328 1447 ntBASIC18.68■□□□□ 0.58
VAPBO95292 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VAPBO95292 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VAPBO95292 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
VAPBO95292 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VAPBO95292 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.68■□□□□ 0.58
VAPBO95292 AL023284.2-201ENST00000405850 579 ntBASIC18.68■□□□□ 0.58
VAPBO95292 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VAPBO95292 TSPY7P-201ENST00000431358 1114 ntBASIC18.68■□□□□ 0.58
VAPBO95292 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.68■□□□□ 0.58
VAPBO95292 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.68■□□□□ 0.58
VAPBO95292 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.68■□□□□ 0.58
VAPBO95292 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.68■□□□□ 0.58
VAPBO95292 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.68■□□□□ 0.58
VAPBO95292 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VAPBO95292 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VAPBO95292 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.68■□□□□ 0.58
VAPBO95292 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.68■□□□□ 0.58
VAPBO95292 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VAPBO95292 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VAPBO95292 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VAPBO95292 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VAPBO95292 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VAPBO95292 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.68■□□□□ 0.58
VAPBO95292 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VAPBO95292 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
VAPBO95292 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VAPBO95292 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 AC079598.2-202ENST00000546624 1451 ntBASIC18.67■□□□□ 0.58
VAPBO95292 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 CA15P1-201ENST00000481698 905 ntBASIC18.67■□□□□ 0.58
VAPBO95292 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.67■□□□□ 0.58
VAPBO95292 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VAPBO95292 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.67■□□□□ 0.58
VAPBO95292 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.67■□□□□ 0.58
VAPBO95292 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VAPBO95292 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.67■□□□□ 0.58
VAPBO95292 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
VAPBO95292 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 AL354751.1-201ENST00000412768 1863 ntBASIC18.67■□□□□ 0.58
VAPBO95292 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPBO95292 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VAPBO95292 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VAPBO95292 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms