Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC21.61■■□□□ 1.05
PRPF40AO75400 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
PRPF40AO75400 UNC93B4-201ENST00000505679 747 ntBASIC21.61■■□□□ 1.05
PRPF40AO75400 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.61■■□□□ 1.05
PRPF40AO75400 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.61■■□□□ 1.05
PRPF40AO75400 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.61■■□□□ 1.05
PRPF40AO75400 AC068587.9-201ENST00000641814 219 ntBASIC21.61■■□□□ 1.05
PRPF40AO75400 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.61■■□□□ 1.05
PRPF40AO75400 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC21.61■■□□□ 1.05
PRPF40AO75400 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.61■■□□□ 1.05
PRPF40AO75400 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC21.61■■□□□ 1.05
PRPF40AO75400 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PRPF40AO75400 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PRPF40AO75400 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21.6■■□□□ 1.05
PRPF40AO75400 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PRPF40AO75400 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
PRPF40AO75400 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PRPF40AO75400 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC21.6■■□□□ 1.05
PRPF40AO75400 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PRPF40AO75400 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
PRPF40AO75400 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PRPF40AO75400 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
PRPF40AO75400 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PRPF40AO75400 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PRPF40AO75400 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.6■■□□□ 1.05
PRPF40AO75400 KRT18P29-201ENST00000397031 1267 ntBASIC21.6■■□□□ 1.05
PRPF40AO75400 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.6■■□□□ 1.05
PRPF40AO75400 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.6■■□□□ 1.05
PRPF40AO75400 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PRPF40AO75400 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PRPF40AO75400 SOX15-203ENST00000570788 1093 ntBASIC21.6■■□□□ 1.05
PRPF40AO75400 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.6■■□□□ 1.05
PRPF40AO75400 HLA-A-209ENST00000638375 975 ntBASIC21.6■■□□□ 1.05
PRPF40AO75400 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC21.6■■□□□ 1.05
PRPF40AO75400 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
PRPF40AO75400 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.6■■□□□ 1.05
PRPF40AO75400 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC21.6■■□□□ 1.05
PRPF40AO75400 FLYWCH1P1-201ENST00000460917 1874 ntBASIC21.6■■□□□ 1.05
PRPF40AO75400 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC21.6■■□□□ 1.05
PRPF40AO75400 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC21.6■■□□□ 1.05
PRPF40AO75400 AC138028.4-201ENST00000564984 1845 ntBASIC21.59■■□□□ 1.05
PRPF40AO75400 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
PRPF40AO75400 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF40AO75400 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC21.59■■□□□ 1.05
PRPF40AO75400 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF40AO75400 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF40AO75400 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.59■■□□□ 1.05
PRPF40AO75400 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
PRPF40AO75400 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF40AO75400 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF40AO75400 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF40AO75400 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC21.59■■□□□ 1.05
PRPF40AO75400 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC21.59■■□□□ 1.05
PRPF40AO75400 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
PRPF40AO75400 AC099398.1-201ENST00000567919 2776 ntBASIC21.59■■□□□ 1.05
PRPF40AO75400 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.59■■□□□ 1.05
PRPF40AO75400 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
PRPF40AO75400 ITM2C-210ENST00000620962 501 ntBASIC21.59■■□□□ 1.05
PRPF40AO75400 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC21.59■■□□□ 1.05
PRPF40AO75400 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
PRPF40AO75400 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC21.59■■□□□ 1.05
PRPF40AO75400 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF40AO75400 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC21.59■■□□□ 1.05
PRPF40AO75400 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF40AO75400 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
PRPF40AO75400 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF40AO75400 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF40AO75400 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
PRPF40AO75400 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF40AO75400 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF40AO75400 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF40AO75400 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF40AO75400 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC21.59■■□□□ 1.05
PRPF40AO75400 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
PRPF40AO75400 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PRPF40AO75400 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
PRPF40AO75400 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC21.58■■□□□ 1.05
PRPF40AO75400 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
PRPF40AO75400 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PRPF40AO75400 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PRPF40AO75400 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms