Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PRKNO60260 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.28■□□□□ 0.36
PRKNO60260 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PRKNO60260 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.28■□□□□ 0.36
PRKNO60260 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PRKNO60260 ARMC10P1-201ENST00000313754 855 ntBASIC17.28■□□□□ 0.36
PRKNO60260 AP000523.1-201ENST00000398242 1049 ntBASIC17.28■□□□□ 0.36
PRKNO60260 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.28■□□□□ 0.36
PRKNO60260 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.28■□□□□ 0.36
PRKNO60260 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.28■□□□□ 0.36
PRKNO60260 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.28■□□□□ 0.36
PRKNO60260 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PRKNO60260 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PRKNO60260 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.28■□□□□ 0.36
PRKNO60260 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
PRKNO60260 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
PRKNO60260 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PRKNO60260 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.28■□□□□ 0.36
PRKNO60260 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.28■□□□□ 0.36
PRKNO60260 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.28■□□□□ 0.36
PRKNO60260 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PRKNO60260 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.27■□□□□ 0.36
PRKNO60260 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PRKNO60260 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PRKNO60260 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PRKNO60260 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PRKNO60260 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.27■□□□□ 0.36
PRKNO60260 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PRKNO60260 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.27■□□□□ 0.36
PRKNO60260 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.27■□□□□ 0.36
PRKNO60260 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PRKNO60260 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.27■□□□□ 0.36
PRKNO60260 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
PRKNO60260 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PRKNO60260 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PRKNO60260 SPDYE15P-201ENST00000424157 909 ntBASIC17.27■□□□□ 0.36
PRKNO60260 AC092647.4-201ENST00000457211 535 ntBASIC17.27■□□□□ 0.36
PRKNO60260 SEC1P-202ENST00000473944 940 ntBASIC17.27■□□□□ 0.36
PRKNO60260 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.27■□□□□ 0.36
PRKNO60260 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.27■□□□□ 0.36
PRKNO60260 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PRKNO60260 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.27■□□□□ 0.36
PRKNO60260 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.27■□□□□ 0.36
PRKNO60260 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.27■□□□□ 0.36
PRKNO60260 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.27■□□□□ 0.36
PRKNO60260 MYC-208ENST00000641036 567 ntBASIC17.27■□□□□ 0.36
PRKNO60260 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PRKNO60260 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.27■□□□□ 0.36
PRKNO60260 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.27■□□□□ 0.35
PRKNO60260 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
PRKNO60260 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PRKNO60260 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PRKNO60260 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
PRKNO60260 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.27■□□□□ 0.35
PRKNO60260 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.27■□□□□ 0.35
PRKNO60260 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.27■□□□□ 0.35
PRKNO60260 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
PRKNO60260 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PRKNO60260 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PRKNO60260 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.26■□□□□ 0.35
PRKNO60260 Z98044.1-201ENST00000632503 1764 ntBASIC17.26■□□□□ 0.35
PRKNO60260 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PRKNO60260 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.26■□□□□ 0.35
PRKNO60260 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
PRKNO60260 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.26■□□□□ 0.35
PRKNO60260 KRT18P23-201ENST00000435622 1283 ntBASIC17.26■□□□□ 0.35
PRKNO60260 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.26■□□□□ 0.35
PRKNO60260 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.26■□□□□ 0.35
PRKNO60260 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.26■□□□□ 0.35
PRKNO60260 AC112497.1-201ENST00000624824 639 ntBASIC17.26■□□□□ 0.35
PRKNO60260 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PRKNO60260 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
PRKNO60260 AC104581.1-202ENST00000635932 2618 ntBASIC17.26■□□□□ 0.35
PRKNO60260 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PRKNO60260 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PRKNO60260 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PRKNO60260 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.25■□□□□ 0.35
PRKNO60260 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PRKNO60260 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PRKNO60260 ANO7L1-203ENST00000602586 1720 ntBASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms