Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SGCEO43556 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
SGCEO43556 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SGCEO43556 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SGCEO43556 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SGCEO43556 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SGCEO43556 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SGCEO43556 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SGCEO43556 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
SGCEO43556 SNORA78-201ENST00000459373 127 ntBASIC16.44■□□□□ 0.22
SGCEO43556 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.44■□□□□ 0.22
SGCEO43556 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.44■□□□□ 0.22
SGCEO43556 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SGCEO43556 AC068587.9-201ENST00000641814 219 ntBASIC16.44■□□□□ 0.22
SGCEO43556 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SGCEO43556 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SGCEO43556 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC16.44■□□□□ 0.22
SGCEO43556 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.44■□□□□ 0.22
SGCEO43556 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SGCEO43556 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SGCEO43556 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SGCEO43556 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SGCEO43556 KRT17P2-201ENST00000300992 1314 ntBASIC16.44■□□□□ 0.22
SGCEO43556 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SGCEO43556 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.43■□□□□ 0.22
SGCEO43556 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
SGCEO43556 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SGCEO43556 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.43■□□□□ 0.22
SGCEO43556 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SGCEO43556 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
SGCEO43556 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC16.43■□□□□ 0.22
SGCEO43556 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SGCEO43556 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SGCEO43556 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
SGCEO43556 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.43■□□□□ 0.22
SGCEO43556 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.43■□□□□ 0.22
SGCEO43556 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SGCEO43556 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC16.43■□□□□ 0.22
SGCEO43556 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC16.43■□□□□ 0.22
SGCEO43556 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
SGCEO43556 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.43■□□□□ 0.22
SGCEO43556 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SGCEO43556 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC16.43■□□□□ 0.22
SGCEO43556 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.43■□□□□ 0.22
SGCEO43556 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.43■□□□□ 0.22
SGCEO43556 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC16.43■□□□□ 0.22
SGCEO43556 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.43■□□□□ 0.22
SGCEO43556 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SGCEO43556 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.43■□□□□ 0.22
SGCEO43556 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 AC007613.1-201ENST00000572811 2597 ntBASIC16.42■□□□□ 0.22
SGCEO43556 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
SGCEO43556 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.42■□□□□ 0.22
SGCEO43556 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.42■□□□□ 0.22
SGCEO43556 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 RCC2P3-201ENST00000418112 1537 ntBASIC16.42■□□□□ 0.22
SGCEO43556 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 RBM17P1-201ENST00000453646 1190 ntBASIC16.42■□□□□ 0.22
SGCEO43556 CA15P1-201ENST00000481698 905 ntBASIC16.42■□□□□ 0.22
SGCEO43556 AP005242.2-201ENST00000580065 1175 ntBASIC16.42■□□□□ 0.22
SGCEO43556 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.42■□□□□ 0.22
SGCEO43556 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC16.42■□□□□ 0.22
SGCEO43556 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
SGCEO43556 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SGCEO43556 AL133373.2-201ENST00000623187 2828 ntBASIC16.41■□□□□ 0.22
SGCEO43556 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SGCEO43556 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC16.41■□□□□ 0.22
SGCEO43556 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.41■□□□□ 0.22
SGCEO43556 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SGCEO43556 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
SGCEO43556 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.41■□□□□ 0.22
SGCEO43556 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SGCEO43556 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
SGCEO43556 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SGCEO43556 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
SGCEO43556 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.41■□□□□ 0.22
SGCEO43556 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SGCEO43556 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.41■□□□□ 0.22
SGCEO43556 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.41■□□□□ 0.22
SGCEO43556 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.41■□□□□ 0.22
SGCEO43556 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SGCEO43556 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SGCEO43556 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.41■□□□□ 0.22
SGCEO43556 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SGCEO43556 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms