Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
NPHP1O15259 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NPHP1O15259 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC23.37■■□□□ 1.33
NPHP1O15259 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC23.37■■□□□ 1.33
NPHP1O15259 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC23.37■■□□□ 1.33
NPHP1O15259 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
NPHP1O15259 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC23.37■■□□□ 1.33
NPHP1O15259 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
NPHP1O15259 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
NPHP1O15259 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
NPHP1O15259 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
NPHP1O15259 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NPHP1O15259 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC23.37■■□□□ 1.33
NPHP1O15259 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NPHP1O15259 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC23.37■■□□□ 1.33
NPHP1O15259 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NPHP1O15259 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NPHP1O15259 PBK-203ENST00000522944 1499 ntTSL 2 BASIC23.36■■□□□ 1.33
NPHP1O15259 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC23.36■■□□□ 1.33
NPHP1O15259 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC23.36■■□□□ 1.33
NPHP1O15259 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
NPHP1O15259 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC23.36■■□□□ 1.33
NPHP1O15259 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
NPHP1O15259 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC23.36■■□□□ 1.33
NPHP1O15259 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC23.36■■□□□ 1.33
NPHP1O15259 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
NPHP1O15259 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
NPHP1O15259 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
NPHP1O15259 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC23.36■■□□□ 1.33
NPHP1O15259 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC23.36■■□□□ 1.33
NPHP1O15259 BMF-207ENST00000559701 630 ntTSL 3 BASIC23.36■■□□□ 1.33
NPHP1O15259 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
NPHP1O15259 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC23.36■■□□□ 1.33
NPHP1O15259 TK1-205ENST00000590862 642 ntTSL 3 BASIC23.36■■□□□ 1.33
NPHP1O15259 AL390719.2-201ENST00000606993 987 ntBASIC23.36■■□□□ 1.33
NPHP1O15259 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
NPHP1O15259 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC23.36■■□□□ 1.33
NPHP1O15259 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
NPHP1O15259 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
NPHP1O15259 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC23.36■■□□□ 1.33
NPHP1O15259 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
NPHP1O15259 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP1O15259 PWWP2AP1-201ENST00000429776 2273 ntBASIC23.35■■□□□ 1.33
NPHP1O15259 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP1O15259 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC23.35■■□□□ 1.33
NPHP1O15259 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP1O15259 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC23.35■■□□□ 1.33
NPHP1O15259 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP1O15259 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP1O15259 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC23.35■■□□□ 1.33
NPHP1O15259 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC23.35■■□□□ 1.33
NPHP1O15259 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP1O15259 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC23.35■■□□□ 1.33
NPHP1O15259 AP002469.2-201ENST00000531724 424 ntBASIC23.35■■□□□ 1.33
NPHP1O15259 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC23.35■■□□□ 1.33
NPHP1O15259 AL662844.1-201ENST00000546340 181 ntBASIC23.35■■□□□ 1.33
NPHP1O15259 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC23.35■■□□□ 1.33
NPHP1O15259 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
NPHP1O15259 AC233702.3-201ENST00000578656 1387 ntBASIC23.35■■□□□ 1.33
NPHP1O15259 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC23.35■■□□□ 1.33
NPHP1O15259 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP1O15259 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC23.35■■□□□ 1.33
NPHP1O15259 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP1O15259 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP1O15259 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP1O15259 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
NPHP1O15259 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP1O15259 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC23.34■■□□□ 1.33
NPHP1O15259 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
NPHP1O15259 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC23.34■■□□□ 1.33
NPHP1O15259 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP1O15259 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP1O15259 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP1O15259 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP1O15259 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP1O15259 VENTXP7-201ENST00000475503 772 ntBASIC23.34■■□□□ 1.33
NPHP1O15259 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP1O15259 GUSBP12-201ENST00000513727 720 ntBASIC23.34■■□□□ 1.33
NPHP1O15259 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC23.34■■□□□ 1.33
NPHP1O15259 GPR32P1-201ENST00000601788 811 ntBASIC23.34■■□□□ 1.33
NPHP1O15259 AL353801.3-201ENST00000609898 542 ntBASIC23.34■■□□□ 1.33
NPHP1O15259 AC023511.2-201ENST00000618803 211 ntBASIC23.34■■□□□ 1.33
NPHP1O15259 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP1O15259 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP1O15259 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP1O15259 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC23.34■■□□□ 1.33
NPHP1O15259 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC23.34■■□□□ 1.33
NPHP1O15259 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP1O15259 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC23.34■■□□□ 1.33
NPHP1O15259 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
NPHP1O15259 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP1O15259 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP1O15259 TP73-202ENST00000354437 2140 ntTSL 5 BASIC23.33■■□□□ 1.33
NPHP1O15259 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP1O15259 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP1O15259 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP1O15259 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP1O15259 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC23.33■■□□□ 1.33
NPHP1O15259 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP1O15259 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms