Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
UBFD1O14562 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.05■□□□□ 0.48
UBFD1O14562 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
UBFD1O14562 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
UBFD1O14562 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
UBFD1O14562 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
UBFD1O14562 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
UBFD1O14562 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
UBFD1O14562 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
UBFD1O14562 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.05■□□□□ 0.48
UBFD1O14562 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.05■□□□□ 0.48
UBFD1O14562 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
UBFD1O14562 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.04■□□□□ 0.48
UBFD1O14562 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.04■□□□□ 0.48
UBFD1O14562 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.04■□□□□ 0.48
UBFD1O14562 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
UBFD1O14562 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.04■□□□□ 0.48
UBFD1O14562 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
UBFD1O14562 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.04■□□□□ 0.48
UBFD1O14562 AP000692.2-201ENST00000608391 879 ntBASIC18.04■□□□□ 0.48
UBFD1O14562 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 AL359736.2-201ENST00000621992 437 ntBASIC18.04■□□□□ 0.48
UBFD1O14562 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.04■□□□□ 0.48
UBFD1O14562 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.04■□□□□ 0.48
UBFD1O14562 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
UBFD1O14562 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.04■□□□□ 0.48
UBFD1O14562 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
UBFD1O14562 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
UBFD1O14562 REXO1L9P-201ENST00000604264 2108 ntBASIC18.04■□□□□ 0.48
UBFD1O14562 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.04■□□□□ 0.48
UBFD1O14562 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.03■□□□□ 0.48
UBFD1O14562 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.03■□□□□ 0.48
UBFD1O14562 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.03■□□□□ 0.48
UBFD1O14562 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
UBFD1O14562 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 FAM197Y1-201ENST00000421178 764 ntBASIC18.03■□□□□ 0.48
UBFD1O14562 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.03■□□□□ 0.48
UBFD1O14562 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.03■□□□□ 0.48
UBFD1O14562 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.03■□□□□ 0.48
UBFD1O14562 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.03■□□□□ 0.48
UBFD1O14562 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.03■□□□□ 0.48
UBFD1O14562 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
UBFD1O14562 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.03■□□□□ 0.48
UBFD1O14562 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
UBFD1O14562 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
UBFD1O14562 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
UBFD1O14562 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
UBFD1O14562 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.02■□□□□ 0.48
UBFD1O14562 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
UBFD1O14562 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
UBFD1O14562 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
UBFD1O14562 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
UBFD1O14562 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
UBFD1O14562 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
UBFD1O14562 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
UBFD1O14562 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
UBFD1O14562 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
UBFD1O14562 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
UBFD1O14562 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.02■□□□□ 0.48
UBFD1O14562 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
UBFD1O14562 MIR564-202ENST00000385049 94 ntBASIC18.02■□□□□ 0.48
UBFD1O14562 AL023284.2-201ENST00000405850 579 ntBASIC18.02■□□□□ 0.48
UBFD1O14562 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.02■□□□□ 0.48
UBFD1O14562 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.02■□□□□ 0.48
UBFD1O14562 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.02■□□□□ 0.48
UBFD1O14562 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
UBFD1O14562 AC138028.4-201ENST00000564984 1845 ntBASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms