Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
UPK1AO00322 KRT8P3-201ENST00000519669 1449 ntBASIC17.65■□□□□ 0.42
UPK1AO00322 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPK1AO00322 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPK1AO00322 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
UPK1AO00322 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
UPK1AO00322 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
UPK1AO00322 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.65■□□□□ 0.42
UPK1AO00322 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.65■□□□□ 0.42
UPK1AO00322 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.65■□□□□ 0.42
UPK1AO00322 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
UPK1AO00322 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPK1AO00322 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.65■□□□□ 0.42
UPK1AO00322 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.65■□□□□ 0.42
UPK1AO00322 DGCR10-201ENST00000609839 495 ntBASIC17.65■□□□□ 0.42
UPK1AO00322 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
UPK1AO00322 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.65■□□□□ 0.42
UPK1AO00322 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPK1AO00322 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPK1AO00322 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPK1AO00322 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPK1AO00322 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.65■□□□□ 0.42
UPK1AO00322 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPK1AO00322 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
UPK1AO00322 AC096733.2-201ENST00000609937 1394 ntBASIC17.65■□□□□ 0.42
UPK1AO00322 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
UPK1AO00322 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.64■□□□□ 0.42
UPK1AO00322 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.64■□□□□ 0.41
UPK1AO00322 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPK1AO00322 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
UPK1AO00322 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.64■□□□□ 0.41
UPK1AO00322 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.64■□□□□ 0.41
UPK1AO00322 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
UPK1AO00322 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPK1AO00322 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
UPK1AO00322 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
UPK1AO00322 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
UPK1AO00322 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.64■□□□□ 0.41
UPK1AO00322 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.64■□□□□ 0.41
UPK1AO00322 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPK1AO00322 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.64■□□□□ 0.41
UPK1AO00322 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPK1AO00322 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPK1AO00322 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.64■□□□□ 0.41
UPK1AO00322 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPK1AO00322 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
UPK1AO00322 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPK1AO00322 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPK1AO00322 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
UPK1AO00322 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
UPK1AO00322 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
UPK1AO00322 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
UPK1AO00322 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.63■□□□□ 0.41
UPK1AO00322 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.63■□□□□ 0.41
UPK1AO00322 AC139713.2-201ENST00000641328 2723 ntBASIC17.63■□□□□ 0.41
UPK1AO00322 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
UPK1AO00322 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
UPK1AO00322 AP003071.4-201ENST00000562276 1284 ntBASIC17.63■□□□□ 0.41
UPK1AO00322 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
UPK1AO00322 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.63■□□□□ 0.41
UPK1AO00322 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
UPK1AO00322 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
UPK1AO00322 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
UPK1AO00322 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.63■□□□□ 0.41
UPK1AO00322 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
UPK1AO00322 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.63■□□□□ 0.41
UPK1AO00322 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
UPK1AO00322 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
UPK1AO00322 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
UPK1AO00322 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
UPK1AO00322 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
UPK1AO00322 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.62■□□□□ 0.41
UPK1AO00322 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
UPK1AO00322 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
UPK1AO00322 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
UPK1AO00322 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.62■□□□□ 0.41
UPK1AO00322 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
UPK1AO00322 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
UPK1AO00322 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
UPK1AO00322 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.62■□□□□ 0.41
UPK1AO00322 TSPY7P-201ENST00000431358 1114 ntBASIC17.62■□□□□ 0.41
UPK1AO00322 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.62■□□□□ 0.41
UPK1AO00322 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.62■□□□□ 0.41
UPK1AO00322 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.62■□□□□ 0.41
UPK1AO00322 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.62■□□□□ 0.41
UPK1AO00322 AC097488.1-201ENST00000507834 756 ntBASIC17.62■□□□□ 0.41
UPK1AO00322 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.62■□□□□ 0.41
UPK1AO00322 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.62■□□□□ 0.41
UPK1AO00322 SLC25A1P4-201ENST00000567977 778 ntBASIC17.62■□□□□ 0.41
UPK1AO00322 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.62■□□□□ 0.41
UPK1AO00322 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.62■□□□□ 0.41
UPK1AO00322 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.62■□□□□ 0.41
UPK1AO00322 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
UPK1AO00322 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
UPK1AO00322 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
UPK1AO00322 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
UPK1AO00322 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.62■□□□□ 0.41
UPK1AO00322 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
UPK1AO00322 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.62■□□□□ 0.41
UPK1AO00322 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms