Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC13.61□□□□□ -0.23
SMKR1H3BMG3 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC13.61□□□□□ -0.23
SMKR1H3BMG3 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
SMKR1H3BMG3 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC13.61□□□□□ -0.23
SMKR1H3BMG3 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SMKR1H3BMG3 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SMKR1H3BMG3 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC13.61□□□□□ -0.23
SMKR1H3BMG3 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SMKR1H3BMG3 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SMKR1H3BMG3 SIRPAP1-201ENST00000448467 1770 ntBASIC13.6□□□□□ -0.23
SMKR1H3BMG3 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 AL645608.8-201ENST00000606034 2086 ntBASIC13.6□□□□□ -0.23
SMKR1H3BMG3 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 AP006587.1-201ENST00000534129 1502 ntBASIC13.6□□□□□ -0.23
SMKR1H3BMG3 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 BET1L-204ENST00000410108 637 ntTSL 3 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 AL390719.1-204ENST00000412397 1219 ntBASIC13.6□□□□□ -0.23
SMKR1H3BMG3 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 BID-214ENST00000617586 542 ntTSL 5 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC13.6□□□□□ -0.23
SMKR1H3BMG3 GOLGA6L5P-202ENST00000515341 1828 ntBASIC13.6□□□□□ -0.23
SMKR1H3BMG3 AC138028.4-201ENST00000564984 1845 ntBASIC13.6□□□□□ -0.23
SMKR1H3BMG3 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 FLYWCH1P1-201ENST00000460917 1874 ntBASIC13.59□□□□□ -0.23
SMKR1H3BMG3 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 YBX1P10-201ENST00000444752 975 ntBASIC13.59□□□□□ -0.23
SMKR1H3BMG3 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 DUX4L16-201ENST00000555130 1264 ntBASIC13.59□□□□□ -0.23
SMKR1H3BMG3 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 NTF6G-201ENST00000591094 616 ntBASIC13.59□□□□□ -0.23
SMKR1H3BMG3 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 REXO1L9P-201ENST00000604264 2108 ntBASIC13.59□□□□□ -0.23
SMKR1H3BMG3 AC005181.1-201ENST00000604782 1256 ntBASIC13.59□□□□□ -0.23
SMKR1H3BMG3 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 AC011767.1-201ENST00000617410 1153 ntBASIC13.59□□□□□ -0.23
SMKR1H3BMG3 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SMKR1H3BMG3 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
SMKR1H3BMG3 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
SMKR1H3BMG3 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
SMKR1H3BMG3 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC13.58□□□□□ -0.23
SMKR1H3BMG3 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
SMKR1H3BMG3 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SMKR1H3BMG3 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms