Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 MIR564-202ENST00000385049 94 ntBASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 SPEG-225ENST00000617028 815 ntTSL 5 BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 AC079602.3-201ENST00000623931 403 ntBASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 KRT18P48-201ENST00000434763 852 ntBASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 CNP-204ENST00000472031 1019 ntTSL 2 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 AC104390.1-201ENST00000555663 520 ntBASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV40A0A0B4J280 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 AC087289.5-201ENST00000586076 3175 ntBASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 IPPK-202ENST00000375522 882 ntTSL 3 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 BCL10-202ENST00000620248 774 ntTSL 5 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 AL391807.1-203ENST00000604392 2365 ntBASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 AC006333.2-201ENST00000607957 2099 ntBASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV40A0A0B4J280 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 AL162741.1-201ENST00000565563 1558 ntBASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
TRAV40A0A0B4J280 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms