Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 KRT18P16-201ENST00000510337 1294 ntBASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 RAP2CP1-201ENST00000605103 478 ntBASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 AL121906.2-201ENST00000621597 723 ntBASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
USH1CQ9Y6N9 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
USH1CQ9Y6N9 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
USH1CQ9Y6N9 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
USH1CQ9Y6N9 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
USH1CQ9Y6N9 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
USH1CQ9Y6N9 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
USH1CQ9Y6N9 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USH1CQ9Y6N9 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.52■□□□□ 0.56
USH1CQ9Y6N9 AC138028.4-201ENST00000564984 1845 ntBASIC18.52■□□□□ 0.56
USH1CQ9Y6N9 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
USH1CQ9Y6N9 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.52■□□□□ 0.56
USH1CQ9Y6N9 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.52■□□□□ 0.56
USH1CQ9Y6N9 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.52■□□□□ 0.56
USH1CQ9Y6N9 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.52■□□□□ 0.56
USH1CQ9Y6N9 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.52■□□□□ 0.56
USH1CQ9Y6N9 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
USH1CQ9Y6N9 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
USH1CQ9Y6N9 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
USH1CQ9Y6N9 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
USH1CQ9Y6N9 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
USH1CQ9Y6N9 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
USH1CQ9Y6N9 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
USH1CQ9Y6N9 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
USH1CQ9Y6N9 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 BX276092.2-201ENST00000417668 665 ntBASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
USH1CQ9Y6N9 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms