Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 AL359736.2-201ENST00000621992 437 ntBASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHA3Q9Y5H8 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 ESPNP-201ENST00000270691 2015 ntBASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
PCDHA3Q9Y5H8 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 MIR564-202ENST00000385049 94 ntBASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHA3Q9Y5H8 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 FAM197Y1-201ENST00000421178 764 ntBASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms