Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LRRC40Q9H9A6 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LRRC40Q9H9A6 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
LRRC40Q9H9A6 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
LRRC40Q9H9A6 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LRRC40Q9H9A6 GPAT2P1-201ENST00000444924 1672 ntBASIC18.92■□□□□ 0.62
LRRC40Q9H9A6 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 RBM17P1-201ENST00000453646 1190 ntBASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 AC007613.1-201ENST00000572811 2597 ntBASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRRC40Q9H9A6 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 AL354751.1-201ENST00000412768 1863 ntBASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 KRT18P41-201ENST00000518924 1277 ntBASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
LRRC40Q9H9A6 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.89■□□□□ 0.62
LRRC40Q9H9A6 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
LRRC40Q9H9A6 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LRRC40Q9H9A6 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.89■□□□□ 0.62
LRRC40Q9H9A6 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
LRRC40Q9H9A6 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 MIR564-202ENST00000385049 94 ntBASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
LRRC40Q9H9A6 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LRRC40Q9H9A6 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
LRRC40Q9H9A6 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LRRC40Q9H9A6 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LRRC40Q9H9A6 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms