Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 RCC2P6-201ENST00000526625 1557 ntBASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 AC142381.4-202ENST00000563973 229 ntBASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 AC099398.1-201ENST00000567919 2776 ntBASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 AL499627.1-201ENST00000569373 2188 ntBASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
AMBRA1Q9C0C7 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 AC134043.2-201ENST00000624206 2238 ntBASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 PRORSD1P-202ENST00000563365 2154 ntBASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 RPPH1-201ENST00000516869 333 ntBASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 AC004264.1-201ENST00000608354 794 ntBASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
AMBRA1Q9C0C7 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 C1QBPP2-201ENST00000528754 825 ntBASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 AC124016.1-201ENST00000609552 612 ntBASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 MTMR9LP-203ENST00000426597 1545 ntBASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.4■□□□□ 0.38
AMBRA1Q9C0C7 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms