Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LIMD2Q9BT23 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LIMD2Q9BT23 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
LIMD2Q9BT23 AC068587.6-202ENST00000641839 5619 ntBASIC11.1□□□□□ -0.63
LIMD2Q9BT23 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 LTF-203ENST00000426532 2494 ntTSL 2 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 AL353807.1-201ENST00000427475 662 ntBASIC11.09□□□□□ -0.63
LIMD2Q9BT23 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 KRT16P5-201ENST00000455284 522 ntBASIC11.09□□□□□ -0.63
LIMD2Q9BT23 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 KLF13-207ENST00000560473 489 ntTSL 3 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 CABP2-204ENST00000636477 941 ntTSL 5 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
LIMD2Q9BT23 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 ESRRAP1-201ENST00000400596 1257 ntBASIC11.08□□□□□ -0.64
LIMD2Q9BT23 KRASP1-201ENST00000407852 552 ntBASIC11.08□□□□□ -0.64
LIMD2Q9BT23 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 AL160286.2-201ENST00000567150 934 ntBASIC11.08□□□□□ -0.64
LIMD2Q9BT23 KLF2-202ENST00000592003 564 ntTSL 3 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC11.08□□□□□ -0.64
LIMD2Q9BT23 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC11.08□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms