Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
NPAS1Q99742 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NPAS1Q99742 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
NPAS1Q99742 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
NPAS1Q99742 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
NPAS1Q99742 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.94■□□□□ 0.3
NPAS1Q99742 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
NPAS1Q99742 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
NPAS1Q99742 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NPAS1Q99742 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NPAS1Q99742 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NPAS1Q99742 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NPAS1Q99742 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NPAS1Q99742 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NPAS1Q99742 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NPAS1Q99742 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NPAS1Q99742 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NPAS1Q99742 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NPAS1Q99742 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.94■□□□□ 0.3
NPAS1Q99742 AC093525.10-201ENST00000625130 1569 ntBASIC16.94■□□□□ 0.3
NPAS1Q99742 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.94■□□□□ 0.3
NPAS1Q99742 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.94■□□□□ 0.3
NPAS1Q99742 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.93■□□□□ 0.3
NPAS1Q99742 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NPAS1Q99742 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.93■□□□□ 0.3
NPAS1Q99742 ANO7L1-203ENST00000602586 1720 ntBASIC16.93■□□□□ 0.3
NPAS1Q99742 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NPAS1Q99742 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
NPAS1Q99742 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.93■□□□□ 0.3
NPAS1Q99742 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NPAS1Q99742 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
NPAS1Q99742 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NPAS1Q99742 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
NPAS1Q99742 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NPAS1Q99742 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NPAS1Q99742 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
NPAS1Q99742 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.93■□□□□ 0.3
NPAS1Q99742 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NPAS1Q99742 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
NPAS1Q99742 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.93■□□□□ 0.3
NPAS1Q99742 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.93■□□□□ 0.3
NPAS1Q99742 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.93■□□□□ 0.3
NPAS1Q99742 MIR3180-5-201ENST00000583743 153 ntBASIC16.93■□□□□ 0.3
NPAS1Q99742 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.93■□□□□ 0.3
NPAS1Q99742 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC16.93■□□□□ 0.3
NPAS1Q99742 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
NPAS1Q99742 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.93■□□□□ 0.3
NPAS1Q99742 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.93■□□□□ 0.3
NPAS1Q99742 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NPAS1Q99742 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.93■□□□□ 0.3
NPAS1Q99742 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
NPAS1Q99742 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC16.93■□□□□ 0.3
NPAS1Q99742 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
NPAS1Q99742 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NPAS1Q99742 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
NPAS1Q99742 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NPAS1Q99742 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.93■□□□□ 0.3
NPAS1Q99742 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.93■□□□□ 0.3
NPAS1Q99742 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NPAS1Q99742 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NPAS1Q99742 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.92■□□□□ 0.3
NPAS1Q99742 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.92■□□□□ 0.3
NPAS1Q99742 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.92■□□□□ 0.3
NPAS1Q99742 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NPAS1Q99742 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NPAS1Q99742 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
NPAS1Q99742 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
NPAS1Q99742 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
NPAS1Q99742 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NPAS1Q99742 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
NPAS1Q99742 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC16.92■□□□□ 0.3
NPAS1Q99742 AC009947.2-201ENST00000444014 672 ntBASIC16.92■□□□□ 0.3
NPAS1Q99742 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
NPAS1Q99742 KRT18P21-201ENST00000515767 1272 ntBASIC16.92■□□□□ 0.3
NPAS1Q99742 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.92■□□□□ 0.3
NPAS1Q99742 TK2-213ENST00000563369 882 ntTSL 5 BASIC16.92■□□□□ 0.3
NPAS1Q99742 RN7SL850P-201ENST00000579959 291 ntBASIC16.92■□□□□ 0.3
NPAS1Q99742 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
NPAS1Q99742 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.92■□□□□ 0.3
NPAS1Q99742 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
NPAS1Q99742 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.92■□□□□ 0.3
NPAS1Q99742 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
NPAS1Q99742 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
NPAS1Q99742 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NPAS1Q99742 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NPAS1Q99742 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
NPAS1Q99742 Z98044.1-201ENST00000632503 1764 ntBASIC16.92■□□□□ 0.3
NPAS1Q99742 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NPAS1Q99742 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
NPAS1Q99742 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NPAS1Q99742 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NPAS1Q99742 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NPAS1Q99742 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.91■□□□□ 0.3
NPAS1Q99742 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NPAS1Q99742 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
NPAS1Q99742 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NPAS1Q99742 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.91■□□□□ 0.3
NPAS1Q99742 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
NPAS1Q99742 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NPAS1Q99742 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms