Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.62■□□□□ 0.89
HPS3Q969F9 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HPS3Q969F9 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HPS3Q969F9 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HPS3Q969F9 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.62■□□□□ 0.89
HPS3Q969F9 AC073592.3-201ENST00000625118 1834 ntBASIC20.62■□□□□ 0.89
HPS3Q969F9 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HPS3Q969F9 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HPS3Q969F9 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
HPS3Q969F9 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HPS3Q969F9 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
HPS3Q969F9 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HPS3Q969F9 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
HPS3Q969F9 KRT8P45-201ENST00000414328 1447 ntBASIC20.61■□□□□ 0.89
HPS3Q969F9 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
HPS3Q969F9 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.61■□□□□ 0.89
HPS3Q969F9 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.61■□□□□ 0.89
HPS3Q969F9 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HPS3Q969F9 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HPS3Q969F9 TSPY14P-201ENST00000303979 915 ntBASIC20.61■□□□□ 0.89
HPS3Q969F9 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HPS3Q969F9 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HPS3Q969F9 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HPS3Q969F9 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HPS3Q969F9 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.61■□□□□ 0.89
HPS3Q969F9 TSPY17P-201ENST00000450329 467 ntBASIC20.61■□□□□ 0.89
HPS3Q969F9 ECEL1P2-202ENST00000465689 757 ntBASIC20.61■□□□□ 0.89
HPS3Q969F9 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.61■□□□□ 0.89
HPS3Q969F9 C2orf69P3-201ENST00000565542 1120 ntBASIC20.61■□□□□ 0.89
HPS3Q969F9 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.61■□□□□ 0.89
HPS3Q969F9 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
HPS3Q969F9 CR769767.2-201ENST00000622735 460 ntBASIC20.61■□□□□ 0.89
HPS3Q969F9 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HPS3Q969F9 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
HPS3Q969F9 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HPS3Q969F9 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
HPS3Q969F9 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
HPS3Q969F9 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HPS3Q969F9 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.61■□□□□ 0.89
HPS3Q969F9 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
HPS3Q969F9 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HPS3Q969F9 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HPS3Q969F9 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HPS3Q969F9 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HPS3Q969F9 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HPS3Q969F9 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HPS3Q969F9 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HPS3Q969F9 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.6■□□□□ 0.89
HPS3Q969F9 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HPS3Q969F9 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.6■□□□□ 0.89
HPS3Q969F9 AC135050.7-201ENST00000624508 2218 ntBASIC20.6■□□□□ 0.89
HPS3Q969F9 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.6■□□□□ 0.89
HPS3Q969F9 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HPS3Q969F9 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.6■□□□□ 0.89
HPS3Q969F9 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HPS3Q969F9 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.6■□□□□ 0.89
HPS3Q969F9 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.6■□□□□ 0.89
HPS3Q969F9 MIR3180-5-201ENST00000583743 153 ntBASIC20.6■□□□□ 0.89
HPS3Q969F9 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
HPS3Q969F9 AC116562.4-202ENST00000641738 218 ntBASIC20.6■□□□□ 0.89
HPS3Q969F9 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HPS3Q969F9 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HPS3Q969F9 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HPS3Q969F9 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.6■□□□□ 0.89
HPS3Q969F9 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
HPS3Q969F9 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.6■□□□□ 0.89
HPS3Q969F9 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HPS3Q969F9 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HPS3Q969F9 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HPS3Q969F9 AC018470.1-201ENST00000624790 3129 ntBASIC20.6■□□□□ 0.89
HPS3Q969F9 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.6■□□□□ 0.89
HPS3Q969F9 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
HPS3Q969F9 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.6■□□□□ 0.89
HPS3Q969F9 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.59■□□□□ 0.89
HPS3Q969F9 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HPS3Q969F9 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HPS3Q969F9 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.59■□□□□ 0.89
HPS3Q969F9 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.59■□□□□ 0.89
HPS3Q969F9 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HPS3Q969F9 BICD1-207ENST00000551848 1962 ntBASIC20.59■□□□□ 0.89
HPS3Q969F9 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.59■□□□□ 0.89
HPS3Q969F9 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HPS3Q969F9 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HPS3Q969F9 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HPS3Q969F9 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HPS3Q969F9 CCR12P-201ENST00000446203 998 ntBASIC20.59■□□□□ 0.89
HPS3Q969F9 NAPSB-206ENST00000562112 1266 ntBASIC20.59■□□□□ 0.89
HPS3Q969F9 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HPS3Q969F9 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.59■□□□□ 0.89
HPS3Q969F9 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
HPS3Q969F9 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HPS3Q969F9 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
HPS3Q969F9 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.59■□□□□ 0.89
HPS3Q969F9 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HPS3Q969F9 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.59■□□□□ 0.89
HPS3Q969F9 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HPS3Q969F9 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
HPS3Q969F9 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HPS3Q969F9 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.59■□□□□ 0.89
HPS3Q969F9 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms