Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 RPPH1-201ENST00000516869 333 ntBASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 CD99P1-205ENST00000527459 561 ntBASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 KRT8P45-201ENST00000414328 1447 ntBASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 AC026271.3-201ENST00000571884 352 ntBASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 AL031985.4-201ENST00000642138 673 ntBASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4AQ8WYN0 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 AC112777.1-201ENST00000540175 1423 ntBASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 AL353807.1-201ENST00000427475 662 ntBASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 AC130371.2-201ENST00000619443 611 ntBASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.29■□□□□ 0.68
ATG4AQ8WYN0 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4AQ8WYN0 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
ATG4AQ8WYN0 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4AQ8WYN0 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4AQ8WYN0 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4AQ8WYN0 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4AQ8WYN0 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
ATG4AQ8WYN0 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.28■□□□□ 0.68
ATG4AQ8WYN0 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4AQ8WYN0 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.28■□□□□ 0.68
ATG4AQ8WYN0 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.28■□□□□ 0.68
ATG4AQ8WYN0 FAM207BP-201ENST00000447172 505 ntBASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms