Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SKA3Q8IX90 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SKA3Q8IX90 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.46■□□□□ 0.23
SKA3Q8IX90 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SKA3Q8IX90 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SKA3Q8IX90 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC16.46■□□□□ 0.23
SKA3Q8IX90 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16.46■□□□□ 0.23
SKA3Q8IX90 AC092338.2-201ENST00000568827 1415 ntBASIC16.46■□□□□ 0.23
SKA3Q8IX90 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SKA3Q8IX90 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.46■□□□□ 0.23
SKA3Q8IX90 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SKA3Q8IX90 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
SKA3Q8IX90 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SKA3Q8IX90 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.46■□□□□ 0.23
SKA3Q8IX90 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.46■□□□□ 0.23
SKA3Q8IX90 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SKA3Q8IX90 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SKA3Q8IX90 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.46■□□□□ 0.23
SKA3Q8IX90 AL023284.2-201ENST00000405850 579 ntBASIC16.46■□□□□ 0.23
SKA3Q8IX90 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.46■□□□□ 0.23
SKA3Q8IX90 AC007663.1-201ENST00000438948 1240 ntBASIC16.46■□□□□ 0.23
SKA3Q8IX90 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.46■□□□□ 0.23
SKA3Q8IX90 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.46■□□□□ 0.23
SKA3Q8IX90 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SKA3Q8IX90 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SKA3Q8IX90 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.46■□□□□ 0.23
SKA3Q8IX90 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SKA3Q8IX90 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.46■□□□□ 0.23
SKA3Q8IX90 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
SKA3Q8IX90 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SKA3Q8IX90 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SKA3Q8IX90 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
SKA3Q8IX90 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC16.46■□□□□ 0.23
SKA3Q8IX90 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
SKA3Q8IX90 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
SKA3Q8IX90 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SKA3Q8IX90 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SKA3Q8IX90 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SKA3Q8IX90 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SKA3Q8IX90 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 AC128688.1-201ENST00000487626 519 ntBASIC16.45■□□□□ 0.22
SKA3Q8IX90 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SKA3Q8IX90 AC073912.3-201ENST00000624414 853 ntBASIC16.45■□□□□ 0.22
SKA3Q8IX90 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.45■□□□□ 0.22
SKA3Q8IX90 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SKA3Q8IX90 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SKA3Q8IX90 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SKA3Q8IX90 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SKA3Q8IX90 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.45■□□□□ 0.22
SKA3Q8IX90 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SKA3Q8IX90 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SKA3Q8IX90 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SKA3Q8IX90 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SKA3Q8IX90 AC093525.10-201ENST00000625130 1569 ntBASIC16.44■□□□□ 0.22
SKA3Q8IX90 LINC01568-207ENST00000641790 1380 ntBASIC16.44■□□□□ 0.22
SKA3Q8IX90 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SKA3Q8IX90 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SKA3Q8IX90 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SKA3Q8IX90 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.44■□□□□ 0.22
SKA3Q8IX90 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.44■□□□□ 0.22
SKA3Q8IX90 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SKA3Q8IX90 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.44■□□□□ 0.22
SKA3Q8IX90 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SKA3Q8IX90 MIR4674-201ENST00000582457 87 ntBASIC16.44■□□□□ 0.22
SKA3Q8IX90 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SKA3Q8IX90 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SKA3Q8IX90 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.44■□□□□ 0.22
SKA3Q8IX90 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.44■□□□□ 0.22
SKA3Q8IX90 MTMR9LP-203ENST00000426597 1545 ntBASIC16.44■□□□□ 0.22
SKA3Q8IX90 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC16.44■□□□□ 0.22
SKA3Q8IX90 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SKA3Q8IX90 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
SKA3Q8IX90 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SKA3Q8IX90 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
SKA3Q8IX90 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.43■□□□□ 0.22
SKA3Q8IX90 AL031598.1-201ENST00000561511 1773 ntBASIC16.43■□□□□ 0.22
SKA3Q8IX90 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SKA3Q8IX90 AL109659.2-201ENST00000606809 1674 ntBASIC16.43■□□□□ 0.22
SKA3Q8IX90 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SKA3Q8IX90 AC008556.1-201ENST00000610908 2040 ntBASIC16.43■□□□□ 0.22
SKA3Q8IX90 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SKA3Q8IX90 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
SKA3Q8IX90 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms