Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC13.29□□□□□ -0.28
COL7A1Q02388 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
COL7A1Q02388 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL7A1Q02388 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL7A1Q02388 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC13.29□□□□□ -0.28
COL7A1Q02388 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL7A1Q02388 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
COL7A1Q02388 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL7A1Q02388 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
COL7A1Q02388 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL7A1Q02388 RPS2P28-201ENST00000314255 741 ntBASIC13.29□□□□□ -0.28
COL7A1Q02388 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC13.29□□□□□ -0.28
COL7A1Q02388 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC13.29□□□□□ -0.28
COL7A1Q02388 COA5-202ENST00000409997 557 ntTSL 4 BASIC13.29□□□□□ -0.28
COL7A1Q02388 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL7A1Q02388 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL7A1Q02388 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL7A1Q02388 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC13.29□□□□□ -0.28
COL7A1Q02388 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC13.29□□□□□ -0.28
COL7A1Q02388 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC13.29□□□□□ -0.28
COL7A1Q02388 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL7A1Q02388 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL7A1Q02388 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL7A1Q02388 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL7A1Q02388 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL7A1Q02388 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC13.29□□□□□ -0.28
COL7A1Q02388 HLA-J-202ENST00000469281 1241 ntBASIC13.29□□□□□ -0.28
COL7A1Q02388 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC13.29□□□□□ -0.28
COL7A1Q02388 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
COL7A1Q02388 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC13.29□□□□□ -0.28
COL7A1Q02388 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC13.29□□□□□ -0.28
COL7A1Q02388 PCDHAC2-203ENST00000615316 3011 ntBASIC13.29□□□□□ -0.28
COL7A1Q02388 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL7A1Q02388 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL7A1Q02388 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL7A1Q02388 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC13.28□□□□□ -0.28
COL7A1Q02388 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL7A1Q02388 KRT18P3-201ENST00000451602 1288 ntBASIC13.28□□□□□ -0.28
COL7A1Q02388 MTDHP5-201ENST00000598980 586 ntBASIC13.28□□□□□ -0.28
COL7A1Q02388 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
COL7A1Q02388 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL7A1Q02388 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL7A1Q02388 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
COL7A1Q02388 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC13.28□□□□□ -0.28
COL7A1Q02388 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL7A1Q02388 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC13.28□□□□□ -0.28
COL7A1Q02388 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC13.28□□□□□ -0.28
COL7A1Q02388 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL7A1Q02388 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL7A1Q02388 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC13.28□□□□□ -0.28
COL7A1Q02388 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC13.28□□□□□ -0.28
COL7A1Q02388 AC009533.2-201ENST00000543664 586 ntBASIC13.28□□□□□ -0.28
COL7A1Q02388 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC13.28□□□□□ -0.28
COL7A1Q02388 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC13.28□□□□□ -0.28
COL7A1Q02388 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC13.28□□□□□ -0.28
COL7A1Q02388 AL138831.2-201ENST00000606564 490 ntBASIC13.28□□□□□ -0.28
COL7A1Q02388 AC114341.1-201ENST00000618070 349 ntBASIC13.28□□□□□ -0.28
COL7A1Q02388 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
COL7A1Q02388 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC13.28□□□□□ -0.28
COL7A1Q02388 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL7A1Q02388 KRT8P7-201ENST00000533003 1432 ntBASIC13.28□□□□□ -0.28
COL7A1Q02388 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL7A1Q02388 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL7A1Q02388 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL7A1Q02388 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL7A1Q02388 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC13.27□□□□□ -0.28
COL7A1Q02388 AC002347.1-201ENST00000569543 541 ntBASIC13.27□□□□□ -0.28
COL7A1Q02388 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC13.27□□□□□ -0.28
COL7A1Q02388 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
COL7A1Q02388 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
COL7A1Q02388 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL7A1Q02388 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC13.27□□□□□ -0.28
COL7A1Q02388 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC13.27□□□□□ -0.29
COL7A1Q02388 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.29
COL7A1Q02388 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC13.27□□□□□ -0.29
COL7A1Q02388 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC13.27□□□□□ -0.29
COL7A1Q02388 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC13.27□□□□□ -0.29
COL7A1Q02388 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC13.27□□□□□ -0.29
COL7A1Q02388 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC13.27□□□□□ -0.29
COL7A1Q02388 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC13.27□□□□□ -0.29
COL7A1Q02388 AC025062.2-201ENST00000605477 670 ntBASIC13.27□□□□□ -0.29
COL7A1Q02388 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL7A1Q02388 PALM-208ENST00000592155 2272 ntTSL 4 BASIC13.27□□□□□ -0.29
COL7A1Q02388 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL7A1Q02388 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL7A1Q02388 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL7A1Q02388 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL7A1Q02388 AC023274.1-201ENST00000418278 595 ntBASIC13.26□□□□□ -0.29
COL7A1Q02388 AL645939.2-201ENST00000427340 991 ntBASIC13.26□□□□□ -0.29
COL7A1Q02388 ELP6-205ENST00000439305 880 ntTSL 2 BASIC13.26□□□□□ -0.29
COL7A1Q02388 LHX6-205ENST00000464484 666 ntTSL 2 BASIC13.26□□□□□ -0.29
COL7A1Q02388 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL7A1Q02388 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL7A1Q02388 MIR3180-4-201ENST00000582223 153 ntBASIC13.26□□□□□ -0.29
COL7A1Q02388 Z83851.2-201ENST00000609564 659 ntBASIC13.26□□□□□ -0.29
COL7A1Q02388 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC13.26□□□□□ -0.29
COL7A1Q02388 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC13.26□□□□□ -0.29
COL7A1Q02388 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC13.26□□□□□ -0.29
COL7A1Q02388 AL157384.1-201ENST00000445995 2473 ntBASIC13.26□□□□□ -0.29
COL7A1Q02388 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms