Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC15.02■□□□□ -0
CX3CL1P78423 CROCCP3-202ENST00000420820 1947 ntBASIC15.02■□□□□ -0
CX3CL1P78423 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CX3CL1P78423 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
CX3CL1P78423 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC15.02■□□□□ -0
CX3CL1P78423 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CX3CL1P78423 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CX3CL1P78423 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CX3CL1P78423 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
CX3CL1P78423 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC15.02■□□□□ -0
CX3CL1P78423 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC15.02■□□□□ -0
CX3CL1P78423 MFAP1P1-201ENST00000442257 1255 ntBASIC15.02■□□□□ -0
CX3CL1P78423 RBM17P1-201ENST00000453646 1190 ntBASIC15.02■□□□□ -0
CX3CL1P78423 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CX3CL1P78423 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC15.02■□□□□ -0
CX3CL1P78423 CYGB-204ENST00000589342 815 ntTSL 3 BASIC15.02■□□□□ -0
CX3CL1P78423 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC15.02■□□□□ -0
CX3CL1P78423 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CX3CL1P78423 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CX3CL1P78423 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CX3CL1P78423 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CX3CL1P78423 AC135050.7-201ENST00000624508 2218 ntBASIC15.02□□□□□ -0.01
CX3CL1P78423 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CX3CL1P78423 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC15.02□□□□□ -0.01
CX3CL1P78423 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC15.02□□□□□ -0.01
CX3CL1P78423 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CX3CL1P78423 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
CX3CL1P78423 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CX3CL1P78423 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
CX3CL1P78423 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC15.02□□□□□ -0.01
CX3CL1P78423 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC15.02□□□□□ -0.01
CX3CL1P78423 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC15.02□□□□□ -0.01
CX3CL1P78423 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CX3CL1P78423 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC15.01□□□□□ -0.01
CX3CL1P78423 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CX3CL1P78423 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC15.01□□□□□ -0.01
CX3CL1P78423 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC15.01□□□□□ -0.01
CX3CL1P78423 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC15.01□□□□□ -0.01
CX3CL1P78423 FDX2-206ENST00000492239 773 ntTSL 2 BASIC15.01□□□□□ -0.01
CX3CL1P78423 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
CX3CL1P78423 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC15.01□□□□□ -0.01
CX3CL1P78423 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC15.01□□□□□ -0.01
CX3CL1P78423 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC15.01□□□□□ -0.01
CX3CL1P78423 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC15.01□□□□□ -0.01
CX3CL1P78423 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
CX3CL1P78423 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
CX3CL1P78423 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CX3CL1P78423 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CX3CL1P78423 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC15□□□□□ -0.01
CX3CL1P78423 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC15□□□□□ -0.01
CX3CL1P78423 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CX3CL1P78423 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC15□□□□□ -0.01
CX3CL1P78423 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC15□□□□□ -0.01
CX3CL1P78423 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CX3CL1P78423 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC15□□□□□ -0.01
CX3CL1P78423 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CX3CL1P78423 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC15□□□□□ -0.01
CX3CL1P78423 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC15□□□□□ -0.01
CX3CL1P78423 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC15□□□□□ -0.01
CX3CL1P78423 AL355075.4-201ENST00000554988 638 ntBASIC15□□□□□ -0.01
CX3CL1P78423 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC15□□□□□ -0.01
CX3CL1P78423 SNX21-213ENST00000614929 587 ntTSL 5 BASIC15□□□□□ -0.01
CX3CL1P78423 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
CX3CL1P78423 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CX3CL1P78423 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CX3CL1P78423 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
CX3CL1P78423 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CX3CL1P78423 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC15□□□□□ -0.01
CX3CL1P78423 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
CX3CL1P78423 KATNBL1P6-202ENST00000562413 1466 ntBASIC15□□□□□ -0.01
CX3CL1P78423 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
CX3CL1P78423 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC15□□□□□ -0.01
CX3CL1P78423 KRT8P3-201ENST00000519669 1449 ntBASIC15□□□□□ -0.01
CX3CL1P78423 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC15□□□□□ -0.01
CX3CL1P78423 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CX3CL1P78423 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC15□□□□□ -0.01
CX3CL1P78423 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
CX3CL1P78423 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms