Protein–RNA interactions for Protein: P53671

LIMK2, LIM domain kinase 2, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK2P53671 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
LIMK2P53671 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMK2P53671 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.79■□□□□ 0.6
LIMK2P53671 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK2P53671 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.78■□□□□ 0.6
LIMK2P53671 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK2P53671 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.78■□□□□ 0.6
LIMK2P53671 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK2P53671 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
LIMK2P53671 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
LIMK2P53671 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.78■□□□□ 0.6
LIMK2P53671 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
LIMK2P53671 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK2P53671 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK2P53671 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK2P53671 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK2P53671 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
LIMK2P53671 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
LIMK2P53671 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
LIMK2P53671 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.78■□□□□ 0.6
LIMK2P53671 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK2P53671 PRSS44-201ENST00000515154 1146 ntBASIC18.78■□□□□ 0.6
LIMK2P53671 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.78■□□□□ 0.6
LIMK2P53671 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.78■□□□□ 0.6
LIMK2P53671 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.78■□□□□ 0.6
LIMK2P53671 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK2P53671 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK2P53671 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK2P53671 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK2P53671 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK2P53671 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.78■□□□□ 0.6
LIMK2P53671 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.78■□□□□ 0.6
LIMK2P53671 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK2P53671 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
LIMK2P53671 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK2P53671 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK2P53671 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.77■□□□□ 0.6
LIMK2P53671 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK2P53671 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
LIMK2P53671 NOC2LP1-202ENST00000452600 2235 ntBASIC18.77■□□□□ 0.6
LIMK2P53671 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK2P53671 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.6
LIMK2P53671 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK2P53671 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK2P53671 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.77■□□□□ 0.6
LIMK2P53671 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK2P53671 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK2P53671 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
LIMK2P53671 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK2P53671 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK2P53671 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
LIMK2P53671 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
LIMK2P53671 SLC25A3P1-201ENST00000443844 931 ntBASIC18.77■□□□□ 0.6
LIMK2P53671 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.77■□□□□ 0.6
LIMK2P53671 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.77■□□□□ 0.6
LIMK2P53671 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMK2P53671 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMK2P53671 C2orf69P3-201ENST00000565542 1120 ntBASIC18.77■□□□□ 0.6
LIMK2P53671 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK2P53671 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK2P53671 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK2P53671 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
LIMK2P53671 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
LIMK2P53671 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
LIMK2P53671 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.77■□□□□ 0.59
LIMK2P53671 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
LIMK2P53671 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
LIMK2P53671 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.77■□□□□ 0.59
LIMK2P53671 KRT8P32-201ENST00000512863 1461 ntBASIC18.77■□□□□ 0.59
LIMK2P53671 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
LIMK2P53671 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
LIMK2P53671 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
LIMK2P53671 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.76■□□□□ 0.59
LIMK2P53671 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK2P53671 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
LIMK2P53671 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK2P53671 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
LIMK2P53671 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
LIMK2P53671 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK2P53671 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK2P53671 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK2P53671 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK2P53671 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMK2P53671 AL137013.1-201ENST00000432946 1228 ntBASIC18.76■□□□□ 0.59
LIMK2P53671 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK2P53671 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK2P53671 AC097488.1-201ENST00000507834 756 ntBASIC18.76■□□□□ 0.59
LIMK2P53671 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK2P53671 AL049597.2-201ENST00000565575 961 ntBASIC18.76■□□□□ 0.59
LIMK2P53671 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
LIMK2P53671 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.76■□□□□ 0.59
LIMK2P53671 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.76■□□□□ 0.59
LIMK2P53671 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK2P53671 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK2P53671 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK2P53671 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.76■□□□□ 0.59
LIMK2P53671 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
LIMK2P53671 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK2P53671 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMK2P53671 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms