Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
SHMT2P34897 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
SHMT2P34897 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.22■□□□□ 0.51
SHMT2P34897 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.22■□□□□ 0.51
SHMT2P34897 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SHMT2P34897 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
SHMT2P34897 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.22■□□□□ 0.51
SHMT2P34897 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.22■□□□□ 0.51
SHMT2P34897 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
SHMT2P34897 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.22■□□□□ 0.51
SHMT2P34897 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHMT2P34897 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SHMT2P34897 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.22■□□□□ 0.51
SHMT2P34897 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
SHMT2P34897 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.22■□□□□ 0.51
SHMT2P34897 KRT8P45-201ENST00000414328 1447 ntBASIC18.22■□□□□ 0.51
SHMT2P34897 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHMT2P34897 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHMT2P34897 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
SHMT2P34897 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SHMT2P34897 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SHMT2P34897 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
SHMT2P34897 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.21■□□□□ 0.51
SHMT2P34897 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.21■□□□□ 0.51
SHMT2P34897 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.21■□□□□ 0.51
SHMT2P34897 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 AC018470.1-201ENST00000624790 3129 ntBASIC18.21■□□□□ 0.51
SHMT2P34897 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.21■□□□□ 0.51
SHMT2P34897 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.21■□□□□ 0.51
SHMT2P34897 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.21■□□□□ 0.51
SHMT2P34897 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
SHMT2P34897 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.21■□□□□ 0.51
SHMT2P34897 TMPOP1-202ENST00000424642 1267 ntBASIC18.21■□□□□ 0.51
SHMT2P34897 KRT18P57-201ENST00000443599 1254 ntBASIC18.21■□□□□ 0.51
SHMT2P34897 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.21■□□□□ 0.51
SHMT2P34897 RN7SL850P-201ENST00000579959 291 ntBASIC18.21■□□□□ 0.51
SHMT2P34897 AL138966.2-201ENST00000621997 464 ntBASIC18.21■□□□□ 0.51
SHMT2P34897 RCC2P3-201ENST00000418112 1537 ntBASIC18.21■□□□□ 0.51
SHMT2P34897 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.21■□□□□ 0.51
SHMT2P34897 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SHMT2P34897 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHMT2P34897 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.21■□□□□ 0.5
SHMT2P34897 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.2■□□□□ 0.5
SHMT2P34897 KRT8P32-201ENST00000512863 1461 ntBASIC18.2■□□□□ 0.5
SHMT2P34897 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHMT2P34897 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
SHMT2P34897 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.2■□□□□ 0.5
SHMT2P34897 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHMT2P34897 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.2■□□□□ 0.5
SHMT2P34897 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHMT2P34897 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHMT2P34897 AL109659.2-201ENST00000606809 1674 ntBASIC18.2■□□□□ 0.5
SHMT2P34897 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHMT2P34897 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHMT2P34897 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.2■□□□□ 0.5
SHMT2P34897 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SHMT2P34897 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
SHMT2P34897 WWOX-216ENST00000569818 525 ntBASIC18.2■□□□□ 0.5
SHMT2P34897 MIR3180-5-201ENST00000583743 153 ntBASIC18.2■□□□□ 0.5
SHMT2P34897 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.2■□□□□ 0.5
SHMT2P34897 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHMT2P34897 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHMT2P34897 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHMT2P34897 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SHMT2P34897 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SHMT2P34897 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHMT2P34897 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SHMT2P34897 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SHMT2P34897 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
SHMT2P34897 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHMT2P34897 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.2■□□□□ 0.5
SHMT2P34897 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.19■□□□□ 0.5
SHMT2P34897 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.19■□□□□ 0.5
SHMT2P34897 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHMT2P34897 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHMT2P34897 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHMT2P34897 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHMT2P34897 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.19■□□□□ 0.5
SHMT2P34897 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SHMT2P34897 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHMT2P34897 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHMT2P34897 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.19■□□□□ 0.5
SHMT2P34897 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHMT2P34897 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHMT2P34897 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms