Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
RXRBP28702 HEIH-201ENST00000623091 1652 ntBASIC24.33■■□□□ 1.49
RXRBP28702 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
RXRBP28702 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.48
RXRBP28702 ZNF815P-204ENST00000434898 1737 ntBASIC24.32■■□□□ 1.48
RXRBP28702 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RXRBP28702 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
RXRBP28702 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC24.32■■□□□ 1.48
RXRBP28702 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC24.32■■□□□ 1.48
RXRBP28702 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RXRBP28702 AC006333.2-201ENST00000607957 2099 ntBASIC24.32■■□□□ 1.48
RXRBP28702 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
RXRBP28702 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RXRBP28702 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RXRBP28702 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RXRBP28702 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RXRBP28702 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RXRBP28702 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC24.32■■□□□ 1.48
RXRBP28702 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC24.32■■□□□ 1.48
RXRBP28702 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC24.32■■□□□ 1.48
RXRBP28702 CCDC74BP1-201ENST00000508880 1123 ntBASIC24.32■■□□□ 1.48
RXRBP28702 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC24.32■■□□□ 1.48
RXRBP28702 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
RXRBP28702 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RXRBP28702 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC24.32■■□□□ 1.48
RXRBP28702 LSM12-202ENST00000585388 942 ntTSL 3 BASIC24.32■■□□□ 1.48
RXRBP28702 AP000867.4-201ENST00000641616 219 ntBASIC24.32■■□□□ 1.48
RXRBP28702 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RXRBP28702 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
RXRBP28702 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
RXRBP28702 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RXRBP28702 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
RXRBP28702 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC24.32■■□□□ 1.48
RXRBP28702 AC009237.14-201ENST00000609975 1594 ntBASIC24.32■■□□□ 1.48
RXRBP28702 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RXRBP28702 AC034236.2-201ENST00000606662 1610 ntBASIC24.32■■□□□ 1.48
RXRBP28702 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC24.31■■□□□ 1.48
RXRBP28702 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC24.31■■□□□ 1.48
RXRBP28702 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC24.31■■□□□ 1.48
RXRBP28702 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
RXRBP28702 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RXRBP28702 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC24.31■■□□□ 1.48
RXRBP28702 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC24.31■■□□□ 1.48
RXRBP28702 GAPDHP21-201ENST00000450301 1010 ntBASIC24.31■■□□□ 1.48
RXRBP28702 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC24.31■■□□□ 1.48
RXRBP28702 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC24.31■■□□□ 1.48
RXRBP28702 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC24.31■■□□□ 1.48
RXRBP28702 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
RXRBP28702 DUT-210ENST00000559935 569 ntTSL 3 BASIC24.31■■□□□ 1.48
RXRBP28702 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RXRBP28702 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC24.31■■□□□ 1.48
RXRBP28702 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
RXRBP28702 GALC-202ENST00000393568 2054 ntTSL 2 BASIC24.31■■□□□ 1.48
RXRBP28702 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RXRBP28702 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RXRBP28702 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RXRBP28702 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
RXRBP28702 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RXRBP28702 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
RXRBP28702 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RXRBP28702 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RXRBP28702 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC24.3■■□□□ 1.48
RXRBP28702 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC24.3■■□□□ 1.48
RXRBP28702 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RXRBP28702 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC24.3■■□□□ 1.48
RXRBP28702 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RXRBP28702 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC24.3■■□□□ 1.48
RXRBP28702 AJ011932.1-201ENST00000621707 465 ntBASIC24.3■■□□□ 1.48
RXRBP28702 SERF2-217ENST00000630046 862 ntTSL 5 BASIC24.3■■□□□ 1.48
RXRBP28702 AL512353.2-201ENST00000448759 1962 ntBASIC24.3■■□□□ 1.48
RXRBP28702 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC24.3■■□□□ 1.48
RXRBP28702 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RXRBP28702 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
RXRBP28702 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
RXRBP28702 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
RXRBP28702 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RXRBP28702 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RXRBP28702 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RXRBP28702 SDHAP1-207ENST00000440850 2000 ntBASIC24.29■■□□□ 1.48
RXRBP28702 EDF1-203ENST00000371649 790 ntTSL 2 BASIC24.29■■□□□ 1.48
RXRBP28702 AC245100.3-201ENST00000441281 285 ntBASIC24.29■■□□□ 1.48
RXRBP28702 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
RXRBP28702 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC24.29■■□□□ 1.48
RXRBP28702 PUS1-205ENST00000535067 838 ntTSL 3 BASIC24.29■■□□□ 1.48
RXRBP28702 AL031432.2-201ENST00000566714 459 ntBASIC24.29■■□□□ 1.48
RXRBP28702 AL928711.1-201ENST00000570165 459 ntBASIC24.29■■□□□ 1.48
RXRBP28702 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RXRBP28702 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC24.29■■□□□ 1.48
RXRBP28702 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC24.29■■□□□ 1.48
RXRBP28702 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
RXRBP28702 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RXRBP28702 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RXRBP28702 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RXRBP28702 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RXRBP28702 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RXRBP28702 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
RXRBP28702 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC24.28■■□□□ 1.48
RXRBP28702 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RXRBP28702 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
RXRBP28702 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms