Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
RFX1P22670 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX1P22670 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.26■□□□□ 0.83
RFX1P22670 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.26■□□□□ 0.83
RFX1P22670 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.26■□□□□ 0.83
RFX1P22670 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX1P22670 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX1P22670 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX1P22670 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX1P22670 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
RFX1P22670 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.26■□□□□ 0.83
RFX1P22670 AC008040.2-201ENST00000461049 708 ntBASIC20.26■□□□□ 0.83
RFX1P22670 AC011506.1-201ENST00000474329 610 ntBASIC20.26■□□□□ 0.83
RFX1P22670 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.26■□□□□ 0.83
RFX1P22670 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.26■□□□□ 0.83
RFX1P22670 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.26■□□□□ 0.83
RFX1P22670 SLC25A1P4-201ENST00000567977 778 ntBASIC20.26■□□□□ 0.83
RFX1P22670 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.26■□□□□ 0.83
RFX1P22670 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.26■□□□□ 0.83
RFX1P22670 DBP-204ENST00000599385 709 ntTSL 3 BASIC20.26■□□□□ 0.83
RFX1P22670 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RFX1P22670 MYC-208ENST00000641036 567 ntBASIC20.26■□□□□ 0.83
RFX1P22670 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX1P22670 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.26■□□□□ 0.83
RFX1P22670 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
RFX1P22670 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.26■□□□□ 0.83
RFX1P22670 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.26■□□□□ 0.83
RFX1P22670 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.26■□□□□ 0.83
RFX1P22670 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX1P22670 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.25■□□□□ 0.83
RFX1P22670 AC073592.3-201ENST00000625118 1834 ntBASIC20.25■□□□□ 0.83
RFX1P22670 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
RFX1P22670 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 AC096733.2-201ENST00000609937 1394 ntBASIC20.25■□□□□ 0.83
RFX1P22670 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC20.25■□□□□ 0.83
RFX1P22670 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
RFX1P22670 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC20.25■□□□□ 0.83
RFX1P22670 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
RFX1P22670 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.25■□□□□ 0.83
RFX1P22670 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.25■□□□□ 0.83
RFX1P22670 MESTP1-201ENST00000404287 994 ntBASIC20.25■□□□□ 0.83
RFX1P22670 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.25■□□□□ 0.83
RFX1P22670 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.25■□□□□ 0.83
RFX1P22670 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.25■□□□□ 0.83
RFX1P22670 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
RFX1P22670 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.25■□□□□ 0.83
RFX1P22670 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.25■□□□□ 0.83
RFX1P22670 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.25■□□□□ 0.83
RFX1P22670 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.25■□□□□ 0.83
RFX1P22670 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 RNF165-205ENST00000588679 2904 ntBASIC20.25■□□□□ 0.83
RFX1P22670 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
RFX1P22670 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
RFX1P22670 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
RFX1P22670 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX1P22670 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX1P22670 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.24■□□□□ 0.83
RFX1P22670 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX1P22670 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX1P22670 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
RFX1P22670 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.24■□□□□ 0.83
RFX1P22670 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.24■□□□□ 0.83
RFX1P22670 KRT18P48-201ENST00000434763 852 ntBASIC20.24■□□□□ 0.83
RFX1P22670 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.24■□□□□ 0.83
RFX1P22670 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RFX1P22670 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.24■□□□□ 0.83
RFX1P22670 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.24■□□□□ 0.83
RFX1P22670 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX1P22670 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX1P22670 AC005082.1-201ENST00000413042 2259 ntBASIC20.24■□□□□ 0.83
RFX1P22670 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RFX1P22670 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.24■□□□□ 0.83
RFX1P22670 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX1P22670 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX1P22670 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RFX1P22670 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX1P22670 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX1P22670 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX1P22670 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX1P22670 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.23■□□□□ 0.83
RFX1P22670 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC20.23■□□□□ 0.83
RFX1P22670 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RFX1P22670 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.23■□□□□ 0.83
RFX1P22670 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms