Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL1P09341 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL1P09341 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CXCL1P09341 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL1P09341 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CXCL1P09341 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CXCL1P09341 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 AC004854.2-201ENST00000608450 1441 ntBASIC14.45□□□□□ -0.1
CXCL1P09341 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.45□□□□□ -0.1
CXCL1P09341 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CXCL1P09341 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CXCL1P09341 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CXCL1P09341 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC14.45□□□□□ -0.1
CXCL1P09341 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CXCL1P09341 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CXCL1P09341 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL1P09341 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL1P09341 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.44□□□□□ -0.1
CXCL1P09341 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL1P09341 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC14.44□□□□□ -0.1
CXCL1P09341 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL1P09341 PCDHA1-201ENST00000378133 2726 ntBASIC14.44□□□□□ -0.1
CXCL1P09341 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
CXCL1P09341 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL1P09341 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC14.44□□□□□ -0.1
CXCL1P09341 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL1P09341 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC14.44□□□□□ -0.1
CXCL1P09341 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC14.44□□□□□ -0.1
CXCL1P09341 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
CXCL1P09341 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
CXCL1P09341 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CXCL1P09341 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL1P09341 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL1P09341 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL1P09341 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.44□□□□□ -0.1
CXCL1P09341 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
CXCL1P09341 MCRIP2P1-201ENST00000394346 511 ntBASIC14.44□□□□□ -0.1
CXCL1P09341 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL1P09341 TERF1P5-201ENST00000477545 1207 ntBASIC14.44□□□□□ -0.1
CXCL1P09341 AL139246.5-201ENST00000606645 996 ntBASIC14.44□□□□□ -0.1
CXCL1P09341 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
CXCL1P09341 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.44□□□□□ -0.1
CXCL1P09341 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
CXCL1P09341 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC14.44□□□□□ -0.1
CXCL1P09341 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL1P09341 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL1P09341 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL1P09341 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL1P09341 NARF-204ENST00000390006 1766 ntTSL 2 BASIC14.44□□□□□ -0.1
CXCL1P09341 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC14.44□□□□□ -0.1
CXCL1P09341 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL1P09341 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CXCL1P09341 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC14.44□□□□□ -0.1
CXCL1P09341 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC14.44□□□□□ -0.1
CXCL1P09341 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC14.44□□□□□ -0.1
CXCL1P09341 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL1P09341 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
CXCL1P09341 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
CXCL1P09341 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC14.43□□□□□ -0.1
CXCL1P09341 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
CXCL1P09341 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CXCL1P09341 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
CXCL1P09341 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CXCL1P09341 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CXCL1P09341 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CXCL1P09341 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
CXCL1P09341 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CXCL1P09341 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CXCL1P09341 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CXCL1P09341 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC14.43□□□□□ -0.1
CXCL1P09341 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CXCL1P09341 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CXCL1P09341 HYI-206ENST00000372434 1025 ntTSL 5 BASIC14.43□□□□□ -0.1
CXCL1P09341 KRT18P14-201ENST00000534205 1250 ntBASIC14.43□□□□□ -0.1
CXCL1P09341 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CXCL1P09341 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC14.43□□□□□ -0.1
CXCL1P09341 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC14.43□□□□□ -0.1
CXCL1P09341 MFSD11-216ENST00000590393 1141 ntBASIC14.43□□□□□ -0.1
CXCL1P09341 UBE2DNL-204ENST00000602536 740 ntBASIC14.43□□□□□ -0.1
CXCL1P09341 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC14.43□□□□□ -0.1
CXCL1P09341 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms