Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PRPF40AO75400 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.65■■□□□ 1.06
PRPF40AO75400 AC120498.8-201ENST00000614275 531 ntBASIC21.65■■□□□ 1.06
PRPF40AO75400 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PRPF40AO75400 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
PRPF40AO75400 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PRPF40AO75400 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.65■■□□□ 1.06
PRPF40AO75400 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC21.65■■□□□ 1.06
PRPF40AO75400 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC21.65■■□□□ 1.06
PRPF40AO75400 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
PRPF40AO75400 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PRPF40AO75400 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PRPF40AO75400 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
PRPF40AO75400 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
PRPF40AO75400 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC21.64■■□□□ 1.06
PRPF40AO75400 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
PRPF40AO75400 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PRPF40AO75400 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
PRPF40AO75400 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC21.64■■□□□ 1.06
PRPF40AO75400 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC21.64■■□□□ 1.05
PRPF40AO75400 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PRPF40AO75400 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PRPF40AO75400 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.64■■□□□ 1.05
PRPF40AO75400 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.64■■□□□ 1.05
PRPF40AO75400 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.64■■□□□ 1.05
PRPF40AO75400 UNC93B5-201ENST00000530315 699 ntBASIC21.64■■□□□ 1.05
PRPF40AO75400 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.64■■□□□ 1.05
PRPF40AO75400 AL160286.2-201ENST00000567150 934 ntBASIC21.64■■□□□ 1.05
PRPF40AO75400 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.64■■□□□ 1.05
PRPF40AO75400 AL121829.2-201ENST00000620908 328 ntBASIC21.64■■□□□ 1.05
PRPF40AO75400 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PRPF40AO75400 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC21.64■■□□□ 1.05
PRPF40AO75400 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PRPF40AO75400 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC21.64■■□□□ 1.05
PRPF40AO75400 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PRPF40AO75400 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.64■■□□□ 1.05
PRPF40AO75400 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
PRPF40AO75400 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PRPF40AO75400 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PRPF40AO75400 GNAS-203ENST00000306120 1878 ntBASIC21.64■■□□□ 1.05
PRPF40AO75400 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
PRPF40AO75400 FST-202ENST00000396947 2538 ntTSL 5 BASIC21.64■■□□□ 1.05
PRPF40AO75400 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PRPF40AO75400 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
PRPF40AO75400 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PRPF40AO75400 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PRPF40AO75400 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC21.63■■□□□ 1.05
PRPF40AO75400 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PRPF40AO75400 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC21.63■■□□□ 1.05
PRPF40AO75400 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
PRPF40AO75400 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC21.63■■□□□ 1.05
PRPF40AO75400 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
PRPF40AO75400 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PRPF40AO75400 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
PRPF40AO75400 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
PRPF40AO75400 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
PRPF40AO75400 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.63■■□□□ 1.05
PRPF40AO75400 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.63■■□□□ 1.05
PRPF40AO75400 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.63■■□□□ 1.05
PRPF40AO75400 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PRPF40AO75400 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
PRPF40AO75400 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.63■■□□□ 1.05
PRPF40AO75400 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.63■■□□□ 1.05
PRPF40AO75400 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
PRPF40AO75400 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
PRPF40AO75400 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
PRPF40AO75400 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.63■■□□□ 1.05
PRPF40AO75400 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
PRPF40AO75400 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PRPF40AO75400 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.62■■□□□ 1.05
PRPF40AO75400 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC21.62■■□□□ 1.05
PRPF40AO75400 AC093677.2-201ENST00000600169 1863 ntBASIC21.62■■□□□ 1.05
PRPF40AO75400 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PRPF40AO75400 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PRPF40AO75400 AC106820.2-201ENST00000563775 3264 ntBASIC21.62■■□□□ 1.05
PRPF40AO75400 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
PRPF40AO75400 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PRPF40AO75400 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PRPF40AO75400 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
PRPF40AO75400 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PRPF40AO75400 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PRPF40AO75400 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.62■■□□□ 1.05
PRPF40AO75400 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
PRPF40AO75400 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PRPF40AO75400 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
PRPF40AO75400 ESRRAP1-201ENST00000400596 1257 ntBASIC21.62■■□□□ 1.05
PRPF40AO75400 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
PRPF40AO75400 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.62■■□□□ 1.05
PRPF40AO75400 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PRPF40AO75400 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC21.62■■□□□ 1.05
PRPF40AO75400 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PRPF40AO75400 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
PRPF40AO75400 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PRPF40AO75400 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
PRPF40AO75400 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
PRPF40AO75400 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF40AO75400 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms