Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SDC3O75056 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.19■□□□□ 0.5
SDC3O75056 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SDC3O75056 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.19■□□□□ 0.5
SDC3O75056 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.19■□□□□ 0.5
SDC3O75056 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
SDC3O75056 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.19■□□□□ 0.5
SDC3O75056 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.19■□□□□ 0.5
SDC3O75056 AP003733.1-201ENST00000491725 852 ntBASIC18.19■□□□□ 0.5
SDC3O75056 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.19■□□□□ 0.5
SDC3O75056 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.19■□□□□ 0.5
SDC3O75056 KRT8P7-201ENST00000533003 1432 ntBASIC18.19■□□□□ 0.5
SDC3O75056 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.19■□□□□ 0.5
SDC3O75056 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
SDC3O75056 AC005332.3-201ENST00000589904 676 ntBASIC18.19■□□□□ 0.5
SDC3O75056 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.19■□□□□ 0.5
SDC3O75056 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.19■□□□□ 0.5
SDC3O75056 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.19■□□□□ 0.5
SDC3O75056 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SDC3O75056 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.19■□□□□ 0.5
SDC3O75056 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SDC3O75056 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SDC3O75056 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.19■□□□□ 0.5
SDC3O75056 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SDC3O75056 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.19■□□□□ 0.5
SDC3O75056 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SDC3O75056 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SDC3O75056 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SDC3O75056 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
SDC3O75056 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SDC3O75056 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SDC3O75056 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.18■□□□□ 0.5
SDC3O75056 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SDC3O75056 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SDC3O75056 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SDC3O75056 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SDC3O75056 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SDC3O75056 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SDC3O75056 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.18■□□□□ 0.5
SDC3O75056 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.18■□□□□ 0.5
SDC3O75056 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.18■□□□□ 0.5
SDC3O75056 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.18■□□□□ 0.5
SDC3O75056 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.18■□□□□ 0.5
SDC3O75056 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
SDC3O75056 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.18■□□□□ 0.5
SDC3O75056 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SDC3O75056 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SDC3O75056 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.18■□□□□ 0.5
SDC3O75056 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDC3O75056 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.17■□□□□ 0.5
SDC3O75056 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDC3O75056 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDC3O75056 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDC3O75056 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDC3O75056 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDC3O75056 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDC3O75056 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SDC3O75056 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDC3O75056 AC034236.2-201ENST00000606662 1610 ntBASIC18.17■□□□□ 0.5
SDC3O75056 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.17■□□□□ 0.5
SDC3O75056 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDC3O75056 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.17■□□□□ 0.5
SDC3O75056 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDC3O75056 DRAXINP1-201ENST00000437611 948 ntBASIC18.17■□□□□ 0.5
SDC3O75056 NUS1P1-201ENST00000446295 882 ntBASIC18.17■□□□□ 0.5
SDC3O75056 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.17■□□□□ 0.5
SDC3O75056 FOSL1P1-201ENST00000511041 816 ntBASIC18.17■□□□□ 0.5
SDC3O75056 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.17■□□□□ 0.5
SDC3O75056 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.17■□□□□ 0.5
SDC3O75056 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.17■□□□□ 0.5
SDC3O75056 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.17■□□□□ 0.5
SDC3O75056 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.17■□□□□ 0.5
SDC3O75056 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SDC3O75056 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.17■□□□□ 0.5
SDC3O75056 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SDC3O75056 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SDC3O75056 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDC3O75056 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDC3O75056 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.17■□□□□ 0.5
SDC3O75056 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.17■□□□□ 0.5
SDC3O75056 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SDC3O75056 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SDC3O75056 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SDC3O75056 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SDC3O75056 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.16■□□□□ 0.5
SDC3O75056 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SDC3O75056 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.16■□□□□ 0.5
SDC3O75056 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.16■□□□□ 0.5
SDC3O75056 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SDC3O75056 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SDC3O75056 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SDC3O75056 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.16■□□□□ 0.5
SDC3O75056 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SDC3O75056 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SDC3O75056 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SDC3O75056 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SDC3O75056 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SDC3O75056 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SDC3O75056 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SDC3O75056 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms