Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.34■□□□□ 0.37
HMGN4O00479 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.34■□□□□ 0.37
HMGN4O00479 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
HMGN4O00479 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGN4O00479 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
HMGN4O00479 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGN4O00479 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.34■□□□□ 0.37
HMGN4O00479 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGN4O00479 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGN4O00479 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGN4O00479 MYLKP1-201ENST00000509077 1580 ntBASIC17.34■□□□□ 0.37
HMGN4O00479 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.34■□□□□ 0.37
HMGN4O00479 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGN4O00479 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.34■□□□□ 0.37
HMGN4O00479 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.34■□□□□ 0.37
HMGN4O00479 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.34■□□□□ 0.37
HMGN4O00479 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.34■□□□□ 0.37
HMGN4O00479 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.34■□□□□ 0.37
HMGN4O00479 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGN4O00479 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGN4O00479 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGN4O00479 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
HMGN4O00479 AL133373.2-201ENST00000623187 2828 ntBASIC17.34■□□□□ 0.37
HMGN4O00479 AC135776.1-201ENST00000319817 2481 ntBASIC17.33■□□□□ 0.37
HMGN4O00479 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGN4O00479 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGN4O00479 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HMGN4O00479 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGN4O00479 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.33■□□□□ 0.37
HMGN4O00479 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.33■□□□□ 0.37
HMGN4O00479 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
HMGN4O00479 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGN4O00479 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.33■□□□□ 0.36
HMGN4O00479 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.33■□□□□ 0.36
HMGN4O00479 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGN4O00479 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGN4O00479 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGN4O00479 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.33■□□□□ 0.36
HMGN4O00479 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGN4O00479 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGN4O00479 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGN4O00479 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.33■□□□□ 0.36
HMGN4O00479 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.33■□□□□ 0.36
HMGN4O00479 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.33■□□□□ 0.36
HMGN4O00479 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGN4O00479 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
HMGN4O00479 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGN4O00479 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGN4O00479 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGN4O00479 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGN4O00479 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.33■□□□□ 0.36
HMGN4O00479 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGN4O00479 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGN4O00479 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
HMGN4O00479 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGN4O00479 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGN4O00479 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HMGN4O00479 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.32■□□□□ 0.36
HMGN4O00479 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.32■□□□□ 0.36
HMGN4O00479 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HMGN4O00479 MIR564-202ENST00000385049 94 ntBASIC17.32■□□□□ 0.36
HMGN4O00479 MCCD1P1-208ENST00000445732 328 ntBASIC17.32■□□□□ 0.36
HMGN4O00479 CA15P1-201ENST00000481698 905 ntBASIC17.32■□□□□ 0.36
HMGN4O00479 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HMGN4O00479 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
HMGN4O00479 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGN4O00479 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.32■□□□□ 0.36
HMGN4O00479 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGN4O00479 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGN4O00479 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGN4O00479 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.32■□□□□ 0.36
HMGN4O00479 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGN4O00479 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGN4O00479 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGN4O00479 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGN4O00479 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGN4O00479 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGN4O00479 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGN4O00479 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
HMGN4O00479 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGN4O00479 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGN4O00479 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGN4O00479 AL355355.2-201ENST00000442321 338 ntBASIC17.31■□□□□ 0.36
HMGN4O00479 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGN4O00479 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGN4O00479 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGN4O00479 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGN4O00479 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGN4O00479 NOC2LP2-201ENST00000407594 1944 ntBASIC17.31■□□□□ 0.36
HMGN4O00479 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGN4O00479 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
HMGN4O00479 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
HMGN4O00479 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGN4O00479 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HMGN4O00479 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGN4O00479 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGN4O00479 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.3■□□□□ 0.36
HMGN4O00479 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGN4O00479 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGN4O00479 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms