Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 GUK1-204ENST00000366721 689 ntTSL 3 BASIC25.12■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 LTBR-211ENST00000543190 785 ntTSL 3 BASIC25.12■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 SLC25A1P4-201ENST00000567977 778 ntBASIC25.12■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC25.12■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC25.12■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 AC126763.1-201ENST00000552015 2118 ntBASIC25.12■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 SNAI3-AS1-205ENST00000568633 2096 ntBASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 AL353807.1-201ENST00000427475 662 ntBASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 FAM207BP-201ENST00000447172 505 ntBASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 NUDT16P1-203ENST00000513809 620 ntBASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 CLEC4GP1-201ENST00000596555 870 ntBASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 AP000525.1-201ENST00000608286 694 ntBASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 AC008622.2-201ENST00000617006 1229 ntBASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 AC006011.2-201ENST00000621313 1158 ntBASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 CD276-201ENST00000318424 2738 ntTSL 5 BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 AC079598.2-202ENST00000546624 1451 ntBASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC25.09■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC25.08■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms