Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 Z85996.1-201ENST00000494644 937 ntBASIC15.11■□□□□ 0.01
FOXA2Q9Y261 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 GRAP-204ENST00000573099 846 ntTSL 3 BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 MIR4785-201ENST00000585005 73 ntBASIC15.11■□□□□ 0.01
FOXA2Q9Y261 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 AC126763.1-201ENST00000552015 2118 ntBASIC15.11■□□□□ 0.01
FOXA2Q9Y261 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 NUDT16P1-203ENST00000513809 620 ntBASIC15.1■□□□□ 0.01
FOXA2Q9Y261 DHDH-203ENST00000522614 776 ntTSL 5 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 AC068587.9-201ENST00000641814 219 ntBASIC15.1■□□□□ 0.01
FOXA2Q9Y261 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC15.1■□□□□ 0.01
FOXA2Q9Y261 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 SNORA78-201ENST00000459373 127 ntBASIC15.09■□□□□ 0.01
FOXA2Q9Y261 PRSS44-201ENST00000515154 1146 ntBASIC15.09■□□□□ 0.01
FOXA2Q9Y261 AC026471.5-201ENST00000615068 467 ntBASIC15.09■□□□□ 0.01
FOXA2Q9Y261 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 MYC-208ENST00000641036 567 ntBASIC15.09■□□□□ 0.01
FOXA2Q9Y261 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 KRT17P2-201ENST00000300992 1314 ntBASIC15.09■□□□□ 0.01
FOXA2Q9Y261 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms