Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 HLA-F-220ENST00000434407 884 ntBASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 Z98044.1-201ENST00000632503 1764 ntBASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 MTMR9LP-203ENST00000426597 1545 ntBASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 AL645929.1-201ENST00000420084 975 ntBASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 MIR3180-4-201ENST00000582223 153 ntBASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 AL136038.4-201ENST00000603606 1261 ntBASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 AC083906.6-201ENST00000641366 219 ntBASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 AL049812.1-201ENST00000432563 2267 ntBASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 AC116562.4-201ENST00000641316 2276 ntBASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLCF1Q9UBD9 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 AL357033.4-201ENST00000617703 1807 ntBASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLCF1Q9UBD9 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms