Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 AC090164.3-201ENST00000610780 2143 ntBASIC17.06■□□□□ 0.32
DDX28Q9NUL7 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 YBX1P10-201ENST00000444752 975 ntBASIC17.06■□□□□ 0.32
DDX28Q9NUL7 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 RNA5SP413-201ENST00000516373 109 ntBASIC17.06■□□□□ 0.32
DDX28Q9NUL7 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 AC008894.3-201ENST00000624324 3103 ntBASIC17.06■□□□□ 0.32
DDX28Q9NUL7 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 AP006587.1-201ENST00000534129 1502 ntBASIC17.06■□□□□ 0.32
DDX28Q9NUL7 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
DDX28Q9NUL7 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.05■□□□□ 0.32
DDX28Q9NUL7 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 KRT18P29-201ENST00000397031 1267 ntBASIC17.05■□□□□ 0.32
DDX28Q9NUL7 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 SOX15-203ENST00000570788 1093 ntBASIC17.05■□□□□ 0.32
DDX28Q9NUL7 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 AL121829.2-201ENST00000620908 328 ntBASIC17.05■□□□□ 0.32
DDX28Q9NUL7 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
DDX28Q9NUL7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 POU5F1P3-201ENST00000428824 1078 ntBASIC17.04■□□□□ 0.32
DDX28Q9NUL7 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms