Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 KRT8P50-201ENST00000562022 1438 ntBASIC18.6■□□□□ 0.57
TREX1Q9NSU2 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.6■□□□□ 0.57
TREX1Q9NSU2 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 ABALON-201ENST00000629058 1903 ntBASIC18.6■□□□□ 0.57
TREX1Q9NSU2 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
TREX1Q9NSU2 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 AC036111.1-201ENST00000533973 1582 ntBASIC18.59■□□□□ 0.57
TREX1Q9NSU2 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 MIR1238-201ENST00000408483 83 ntBASIC18.59■□□□□ 0.57
TREX1Q9NSU2 TSPY15P-201ENST00000457163 923 ntBASIC18.59■□□□□ 0.57
TREX1Q9NSU2 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
TREX1Q9NSU2 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TREX1Q9NSU2 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TREX1Q9NSU2 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
TREX1Q9NSU2 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TREX1Q9NSU2 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.58■□□□□ 0.57
TREX1Q9NSU2 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.58■□□□□ 0.57
TREX1Q9NSU2 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
TREX1Q9NSU2 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TREX1Q9NSU2 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TREX1Q9NSU2 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TREX1Q9NSU2 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TREX1Q9NSU2 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
TREX1Q9NSU2 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.58■□□□□ 0.56
TREX1Q9NSU2 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.58■□□□□ 0.56
TREX1Q9NSU2 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.58■□□□□ 0.56
TREX1Q9NSU2 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.58■□□□□ 0.56
TREX1Q9NSU2 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TREX1Q9NSU2 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TREX1Q9NSU2 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TREX1Q9NSU2 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TREX1Q9NSU2 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TREX1Q9NSU2 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
TREX1Q9NSU2 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
TREX1Q9NSU2 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 AC007663.1-201ENST00000438948 1240 ntBASIC18.57■□□□□ 0.56
TREX1Q9NSU2 CCR12P-201ENST00000446203 998 ntBASIC18.57■□□□□ 0.56
TREX1Q9NSU2 WWOX-216ENST00000569818 525 ntBASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms