Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 ESPNP-201ENST00000270691 2015 ntBASIC20.02■□□□□ 0.8
SIX2Q9NPC8 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 AP003041.3-201ENST00000527151 707 ntBASIC20.02■□□□□ 0.8
SIX2Q9NPC8 AL353719.1-201ENST00000566847 864 ntBASIC20.02■□□□□ 0.8
SIX2Q9NPC8 MIR3180-5-201ENST00000583743 153 ntBASIC20.02■□□□□ 0.8
SIX2Q9NPC8 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 AC036111.1-201ENST00000533973 1582 ntBASIC20.02■□□□□ 0.8
SIX2Q9NPC8 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX2Q9NPC8 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.02■□□□□ 0.79
SIX2Q9NPC8 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SIX2Q9NPC8 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SIX2Q9NPC8 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SIX2Q9NPC8 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SIX2Q9NPC8 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SIX2Q9NPC8 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 AC093677.2-201ENST00000600169 1863 ntBASIC20.01■□□□□ 0.79
SIX2Q9NPC8 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 AC034236.2-201ENST00000606662 1610 ntBASIC20.01■□□□□ 0.79
SIX2Q9NPC8 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 AC092338.2-201ENST00000568827 1415 ntBASIC20.01■□□□□ 0.79
SIX2Q9NPC8 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX2Q9NPC8 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
SIX2Q9NPC8 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
SIX2Q9NPC8 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20■□□□□ 0.79
SIX2Q9NPC8 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20■□□□□ 0.79
SIX2Q9NPC8 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20■□□□□ 0.79
SIX2Q9NPC8 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20■□□□□ 0.79
SIX2Q9NPC8 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SIX2Q9NPC8 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SIX2Q9NPC8 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20■□□□□ 0.79
SIX2Q9NPC8 SLC25A1P2-201ENST00000430693 912 ntBASIC20■□□□□ 0.79
SIX2Q9NPC8 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20■□□□□ 0.79
SIX2Q9NPC8 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20■□□□□ 0.79
SIX2Q9NPC8 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20■□□□□ 0.79
SIX2Q9NPC8 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20■□□□□ 0.79
SIX2Q9NPC8 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20■□□□□ 0.79
SIX2Q9NPC8 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20■□□□□ 0.79
SIX2Q9NPC8 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20■□□□□ 0.79
SIX2Q9NPC8 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SIX2Q9NPC8 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
SIX2Q9NPC8 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SIX2Q9NPC8 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20■□□□□ 0.79
SIX2Q9NPC8 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
SIX2Q9NPC8 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20■□□□□ 0.79
SIX2Q9NPC8 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SIX2Q9NPC8 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.99■□□□□ 0.79
SIX2Q9NPC8 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.99■□□□□ 0.79
SIX2Q9NPC8 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.99■□□□□ 0.79
SIX2Q9NPC8 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SIX2Q9NPC8 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SIX2Q9NPC8 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.99■□□□□ 0.79
SIX2Q9NPC8 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SIX2Q9NPC8 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.99■□□□□ 0.79
SIX2Q9NPC8 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
SIX2Q9NPC8 MIR1238-201ENST00000408483 83 ntBASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms