Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 HMGA1P5-201ENST00000412453 271 ntBASIC17.29■□□□□ 0.36
UBQLN3Q9H347 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UBQLN3Q9H347 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 AL137013.1-201ENST00000432946 1228 ntBASIC17.28■□□□□ 0.36
UBQLN3Q9H347 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 AC010203.1-204ENST00000548782 407 ntBASIC17.28■□□□□ 0.36
UBQLN3Q9H347 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.28■□□□□ 0.36
UBQLN3Q9H347 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.28■□□□□ 0.36
UBQLN3Q9H347 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 AC135050.7-201ENST00000624508 2218 ntBASIC17.28■□□□□ 0.36
UBQLN3Q9H347 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBQLN3Q9H347 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 AC005082.1-201ENST00000413042 2259 ntBASIC17.27■□□□□ 0.36
UBQLN3Q9H347 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 TMPOP1-202ENST00000424642 1267 ntBASIC17.27■□□□□ 0.36
UBQLN3Q9H347 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
UBQLN3Q9H347 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.27■□□□□ 0.35
UBQLN3Q9H347 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.27■□□□□ 0.35
UBQLN3Q9H347 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
UBQLN3Q9H347 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.27■□□□□ 0.35
UBQLN3Q9H347 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
UBQLN3Q9H347 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
UBQLN3Q9H347 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.27■□□□□ 0.35
UBQLN3Q9H347 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.27■□□□□ 0.35
UBQLN3Q9H347 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
UBQLN3Q9H347 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
UBQLN3Q9H347 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
UBQLN3Q9H347 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
UBQLN3Q9H347 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
UBQLN3Q9H347 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
UBQLN3Q9H347 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
UBQLN3Q9H347 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UBQLN3Q9H347 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
UBQLN3Q9H347 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
UBQLN3Q9H347 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UBQLN3Q9H347 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms