Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 VENTXP5-201ENST00000523979 775 ntBASIC20.19■□□□□ 0.82
CDT1Q9H211 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.19■□□□□ 0.82
CDT1Q9H211 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDT1Q9H211 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDT1Q9H211 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CDT1Q9H211 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDT1Q9H211 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDT1Q9H211 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.19■□□□□ 0.82
CDT1Q9H211 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDT1Q9H211 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CDT1Q9H211 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.19■□□□□ 0.82
CDT1Q9H211 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDT1Q9H211 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDT1Q9H211 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDT1Q9H211 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDT1Q9H211 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDT1Q9H211 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CDT1Q9H211 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.18■□□□□ 0.82
CDT1Q9H211 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CDT1Q9H211 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDT1Q9H211 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.18■□□□□ 0.82
CDT1Q9H211 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDT1Q9H211 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.18■□□□□ 0.82
CDT1Q9H211 AL136038.3-201ENST00000561909 1096 ntBASIC20.18■□□□□ 0.82
CDT1Q9H211 MIR3180-4-201ENST00000582223 153 ntBASIC20.18■□□□□ 0.82
CDT1Q9H211 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.18■□□□□ 0.82
CDT1Q9H211 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDT1Q9H211 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDT1Q9H211 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CDT1Q9H211 AC005332.1-201ENST00000577698 1310 ntBASIC20.18■□□□□ 0.82
CDT1Q9H211 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDT1Q9H211 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDT1Q9H211 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.17■□□□□ 0.82
CDT1Q9H211 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDT1Q9H211 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDT1Q9H211 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDT1Q9H211 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.17■□□□□ 0.82
CDT1Q9H211 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.17■□□□□ 0.82
CDT1Q9H211 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.17■□□□□ 0.82
CDT1Q9H211 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.17■□□□□ 0.82
CDT1Q9H211 AL136038.4-201ENST00000603606 1261 ntBASIC20.17■□□□□ 0.82
CDT1Q9H211 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.17■□□□□ 0.82
CDT1Q9H211 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDT1Q9H211 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDT1Q9H211 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CDT1Q9H211 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDT1Q9H211 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
CDT1Q9H211 AL499627.1-201ENST00000569373 2188 ntBASIC20.17■□□□□ 0.82
CDT1Q9H211 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDT1Q9H211 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.16■□□□□ 0.82
CDT1Q9H211 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDT1Q9H211 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDT1Q9H211 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDT1Q9H211 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.16■□□□□ 0.82
CDT1Q9H211 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.16■□□□□ 0.82
CDT1Q9H211 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.16■□□□□ 0.82
CDT1Q9H211 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDT1Q9H211 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDT1Q9H211 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.16■□□□□ 0.82
CDT1Q9H211 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDT1Q9H211 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.16■□□□□ 0.82
CDT1Q9H211 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDT1Q9H211 PCED1CP-201ENST00000419887 785 ntBASIC20.16■□□□□ 0.82
CDT1Q9H211 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDT1Q9H211 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.16■□□□□ 0.82
CDT1Q9H211 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.16■□□□□ 0.82
CDT1Q9H211 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.16■□□□□ 0.82
CDT1Q9H211 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CDT1Q9H211 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDT1Q9H211 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDT1Q9H211 AC093525.10-201ENST00000625130 1569 ntBASIC20.16■□□□□ 0.82
CDT1Q9H211 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDT1Q9H211 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDT1Q9H211 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDT1Q9H211 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDT1Q9H211 AL391807.1-203ENST00000604392 2365 ntBASIC20.15■□□□□ 0.82
CDT1Q9H211 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDT1Q9H211 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CDT1Q9H211 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDT1Q9H211 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.15■□□□□ 0.82
CDT1Q9H211 AP000593.1-201ENST00000393668 712 ntBASIC20.15■□□□□ 0.82
CDT1Q9H211 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
CDT1Q9H211 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDT1Q9H211 HLA-F-220ENST00000434407 884 ntBASIC20.15■□□□□ 0.82
CDT1Q9H211 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.15■□□□□ 0.82
CDT1Q9H211 DBP-204ENST00000599385 709 ntTSL 3 BASIC20.15■□□□□ 0.82
CDT1Q9H211 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDT1Q9H211 AP000550.4-202ENST00000639755 178 ntBASIC20.15■□□□□ 0.82
CDT1Q9H211 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.15■□□□□ 0.82
CDT1Q9H211 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
CDT1Q9H211 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDT1Q9H211 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CDT1Q9H211 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDT1Q9H211 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CDT1Q9H211 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CDT1Q9H211 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CDT1Q9H211 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.15■□□□□ 0.82
CDT1Q9H211 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDT1Q9H211 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
CDT1Q9H211 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms