Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 BCL2-203ENST00000589955 5011 ntBASIC16.62■□□□□ 0.25
USB1Q9BQ65 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USB1Q9BQ65 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USB1Q9BQ65 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
USB1Q9BQ65 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
USB1Q9BQ65 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USB1Q9BQ65 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USB1Q9BQ65 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USB1Q9BQ65 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USB1Q9BQ65 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
USB1Q9BQ65 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
USB1Q9BQ65 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
USB1Q9BQ65 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USB1Q9BQ65 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
USB1Q9BQ65 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
USB1Q9BQ65 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USB1Q9BQ65 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USB1Q9BQ65 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USB1Q9BQ65 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
USB1Q9BQ65 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USB1Q9BQ65 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USB1Q9BQ65 AC007613.1-201ENST00000572811 2597 ntBASIC16.61■□□□□ 0.25
USB1Q9BQ65 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USB1Q9BQ65 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC16.61■□□□□ 0.25
USB1Q9BQ65 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USB1Q9BQ65 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.61■□□□□ 0.25
USB1Q9BQ65 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USB1Q9BQ65 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.61■□□□□ 0.25
USB1Q9BQ65 TSPY23P-201ENST00000440136 739 ntBASIC16.61■□□□□ 0.25
USB1Q9BQ65 KRT18P57-201ENST00000443599 1254 ntBASIC16.61■□□□□ 0.25
USB1Q9BQ65 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USB1Q9BQ65 COX11P1-201ENST00000489116 835 ntBASIC16.61■□□□□ 0.25
USB1Q9BQ65 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.61■□□□□ 0.25
USB1Q9BQ65 AP003041.3-201ENST00000527151 707 ntBASIC16.61■□□□□ 0.25
USB1Q9BQ65 NEK4P2-201ENST00000580004 1012 ntBASIC16.61■□□□□ 0.25
USB1Q9BQ65 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.61■□□□□ 0.25
USB1Q9BQ65 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
USB1Q9BQ65 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
USB1Q9BQ65 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC16.61■□□□□ 0.25
USB1Q9BQ65 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USB1Q9BQ65 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
USB1Q9BQ65 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
USB1Q9BQ65 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
USB1Q9BQ65 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.61■□□□□ 0.25
USB1Q9BQ65 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
USB1Q9BQ65 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USB1Q9BQ65 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.61■□□□□ 0.25
USB1Q9BQ65 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC16.6■□□□□ 0.25
USB1Q9BQ65 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USB1Q9BQ65 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
USB1Q9BQ65 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC16.6■□□□□ 0.25
USB1Q9BQ65 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.6■□□□□ 0.25
USB1Q9BQ65 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USB1Q9BQ65 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USB1Q9BQ65 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.6■□□□□ 0.25
USB1Q9BQ65 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USB1Q9BQ65 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USB1Q9BQ65 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USB1Q9BQ65 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USB1Q9BQ65 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
USB1Q9BQ65 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USB1Q9BQ65 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
USB1Q9BQ65 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.6■□□□□ 0.25
USB1Q9BQ65 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.6■□□□□ 0.25
USB1Q9BQ65 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USB1Q9BQ65 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USB1Q9BQ65 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.6■□□□□ 0.25
USB1Q9BQ65 DUX4L26-201ENST00000489078 1255 ntBASIC16.6■□□□□ 0.25
USB1Q9BQ65 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.6■□□□□ 0.25
USB1Q9BQ65 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.6■□□□□ 0.25
USB1Q9BQ65 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.6■□□□□ 0.25
USB1Q9BQ65 AC141257.4-201ENST00000634557 245 ntBASIC16.6■□□□□ 0.25
USB1Q9BQ65 AC136944.6-201ENST00000634818 245 ntBASIC16.6■□□□□ 0.25
USB1Q9BQ65 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USB1Q9BQ65 AP000974.1-201ENST00000623909 2387 ntBASIC16.6■□□□□ 0.25
USB1Q9BQ65 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USB1Q9BQ65 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
USB1Q9BQ65 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.6■□□□□ 0.25
USB1Q9BQ65 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
USB1Q9BQ65 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
USB1Q9BQ65 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USB1Q9BQ65 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC16.59■□□□□ 0.25
USB1Q9BQ65 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC16.59■□□□□ 0.25
USB1Q9BQ65 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USB1Q9BQ65 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms