Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 GAS7-202ENST00000396115 929 ntTSL 5 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 UNC93B4-201ENST00000505679 747 ntBASIC16.28■□□□□ 0.2
NKX3-1Q99801 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 AC233263.1-201ENST00000578059 224 ntBASIC16.28■□□□□ 0.2
NKX3-1Q99801 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.27■□□□□ 0.2
NKX3-1Q99801 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
NKX3-1Q99801 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NKX3-1Q99801 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
NKX3-1Q99801 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
NKX3-1Q99801 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NKX3-1Q99801 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
NKX3-1Q99801 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NKX3-1Q99801 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
NKX3-1Q99801 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NKX3-1Q99801 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
NKX3-1Q99801 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NKX3-1Q99801 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
NKX3-1Q99801 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NKX3-1Q99801 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NKX3-1Q99801 RHOD-202ENST00000532559 538 ntTSL 3 BASIC16.27■□□□□ 0.2
NKX3-1Q99801 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NKX3-1Q99801 IRX5-204ENST00000560154 879 ntTSL 5 BASIC16.27■□□□□ 0.2
NKX3-1Q99801 AL160286.2-201ENST00000567150 934 ntBASIC16.27■□□□□ 0.2
NKX3-1Q99801 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NKX3-1Q99801 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC16.27■□□□□ 0.2
NKX3-1Q99801 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NKX3-1Q99801 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NKX3-1Q99801 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.27■□□□□ 0.2
NKX3-1Q99801 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NKX3-1Q99801 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NKX3-1Q99801 AP000997.3-201ENST00000623333 2250 ntBASIC16.27■□□□□ 0.2
NKX3-1Q99801 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
NKX3-1Q99801 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.27■□□□□ 0.19
NKX3-1Q99801 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.27■□□□□ 0.19
NKX3-1Q99801 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NKX3-1Q99801 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.27■□□□□ 0.19
NKX3-1Q99801 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.27■□□□□ 0.19
NKX3-1Q99801 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.27■□□□□ 0.19
NKX3-1Q99801 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.27■□□□□ 0.19
NKX3-1Q99801 ABALON-201ENST00000629058 1903 ntBASIC16.27■□□□□ 0.19
NKX3-1Q99801 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.19
NKX3-1Q99801 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.27■□□□□ 0.19
NKX3-1Q99801 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
NKX3-1Q99801 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.27■□□□□ 0.19
NKX3-1Q99801 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.27■□□□□ 0.19
NKX3-1Q99801 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NKX3-1Q99801 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NKX3-1Q99801 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
NKX3-1Q99801 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.26■□□□□ 0.19
NKX3-1Q99801 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC16.26■□□□□ 0.19
NKX3-1Q99801 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC16.26■□□□□ 0.19
NKX3-1Q99801 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.26■□□□□ 0.19
NKX3-1Q99801 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
NKX3-1Q99801 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC16.26■□□□□ 0.19
NKX3-1Q99801 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC16.26■□□□□ 0.19
NKX3-1Q99801 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.26■□□□□ 0.19
NKX3-1Q99801 NBPF21P-201ENST00000425093 1451 ntBASIC16.26■□□□□ 0.19
NKX3-1Q99801 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC16.26■□□□□ 0.19
NKX3-1Q99801 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.26■□□□□ 0.19
NKX3-1Q99801 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC16.26■□□□□ 0.19
NKX3-1Q99801 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
NKX3-1Q99801 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NKX3-1Q99801 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms