Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 YBX1P5-201ENST00000509441 847 ntBASIC18.4■□□□□ 0.54
VPS13AQ96RL7 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 RPS2P1-201ENST00000434010 821 ntBASIC18.4■□□□□ 0.54
VPS13AQ96RL7 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 RNA5SP415-201ENST00000517246 115 ntBASIC18.4■□□□□ 0.54
VPS13AQ96RL7 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 AC040169.1-201ENST00000565382 521 ntBASIC18.4■□□□□ 0.54
VPS13AQ96RL7 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS13AQ96RL7 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
VPS13AQ96RL7 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
VPS13AQ96RL7 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
VPS13AQ96RL7 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 AC012645.4-201ENST00000610691 1061 ntBASIC18.39■□□□□ 0.53
VPS13AQ96RL7 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 AP005117.1-201ENST00000584346 1413 ntBASIC18.39■□□□□ 0.53
VPS13AQ96RL7 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS13AQ96RL7 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.38■□□□□ 0.53
VPS13AQ96RL7 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 AC004817.3-201ENST00000602957 2129 ntBASIC18.38■□□□□ 0.53
VPS13AQ96RL7 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.38■□□□□ 0.53
VPS13AQ96RL7 AC009533.2-201ENST00000543664 586 ntBASIC18.38■□□□□ 0.53
VPS13AQ96RL7 AC106028.4-201ENST00000614509 607 ntBASIC18.38■□□□□ 0.53
VPS13AQ96RL7 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 AL109659.2-201ENST00000606809 1674 ntBASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms