Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.58■□□□□ 0.4
PTCHD1Q96NR3 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.58■□□□□ 0.4
PTCHD1Q96NR3 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
PTCHD1Q96NR3 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTCHD1Q96NR3 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTCHD1Q96NR3 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.58■□□□□ 0.4
PTCHD1Q96NR3 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
PTCHD1Q96NR3 AC093503.3-201ENST00000624917 2352 ntBASIC17.58■□□□□ 0.4
PTCHD1Q96NR3 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PTCHD1Q96NR3 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.58■□□□□ 0.4
PTCHD1Q96NR3 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 AP000523.1-201ENST00000398242 1049 ntBASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 AC117947.1-201ENST00000427448 529 ntBASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 AL049597.2-201ENST00000565575 961 ntBASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 AC006011.2-201ENST00000621313 1158 ntBASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 AL031432.5-201ENST00000641059 760 ntBASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 AC068587.9-201ENST00000641814 219 ntBASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD1Q96NR3 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 HEIH-201ENST00000623091 1652 ntBASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 YBX1P2-201ENST00000489612 999 ntBASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 NEK4P2-201ENST00000580004 1012 ntBASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 AL023973.1-201ENST00000624619 620 ntBASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 AC020763.4-201ENST00000623414 4170 ntBASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD1Q96NR3 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 MIR1224-201ENST00000408193 85 ntBASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 DUX4L26-201ENST00000489078 1255 ntBASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms