Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
SMC1BQ8NDV3 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
SMC1BQ8NDV3 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
SMC1BQ8NDV3 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
SMC1BQ8NDV3 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC22.08■■□□□ 1.13
SMC1BQ8NDV3 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
SMC1BQ8NDV3 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
SMC1BQ8NDV3 AC005829.1-201ENST00000570002 483 ntBASIC22.08■■□□□ 1.13
SMC1BQ8NDV3 GZMM-202ENST00000592501 941 ntTSL 3 BASIC22.08■■□□□ 1.13
SMC1BQ8NDV3 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
SMC1BQ8NDV3 AC106028.4-201ENST00000614509 607 ntBASIC22.08■■□□□ 1.13
SMC1BQ8NDV3 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
SMC1BQ8NDV3 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
SMC1BQ8NDV3 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
SMC1BQ8NDV3 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC22.08■■□□□ 1.12
SMC1BQ8NDV3 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.12
SMC1BQ8NDV3 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
SMC1BQ8NDV3 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 PAWRP1-201ENST00000451083 565 ntBASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 AP002472.1-201ENST00000577490 586 ntBASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
SMC1BQ8NDV3 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 MED17-221ENST00000639724 2317 ntTSL 5 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 INIP-202ENST00000374236 874 ntTSL 2 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 UNC93B6-202ENST00000528242 690 ntBASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 PNMT-203ENST00000581428 677 ntTSL 2 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 MIR3180-4-201ENST00000582223 153 ntBASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 MIR1199-201ENST00000621445 119 ntBASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 KRT89P-201ENST00000620027 1478 ntBASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC22.06■■□□□ 1.12
SMC1BQ8NDV3 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 CRCP-205ENST00000431089 942 ntTSL 2 BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 YBX1P5-201ENST00000509441 847 ntBASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 AC008735.5-201ENST00000623544 497 ntBASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SMC1BQ8NDV3 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SMC1BQ8NDV3 AC006128.1-201ENST00000624704 1661 ntBASIC22.04■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms