Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AC073912.3-201ENST00000624414 853 ntBASIC20.12■□□□□ 0.81
KRT39Q6A163 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.12■□□□□ 0.81
KRT39Q6A163 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
KRT39Q6A163 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
KRT39Q6A163 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
KRT39Q6A163 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
KRT39Q6A163 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
KRT39Q6A163 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
KRT39Q6A163 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.12■□□□□ 0.81
KRT39Q6A163 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
KRT39Q6A163 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
KRT39Q6A163 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
KRT39Q6A163 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 AC104581.1-202ENST00000635932 2618 ntBASIC20.11■□□□□ 0.81
KRT39Q6A163 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 AC090164.3-201ENST00000610780 2143 ntBASIC20.11■□□□□ 0.81
KRT39Q6A163 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 AC009113.1-201ENST00000570267 2443 ntBASIC20.11■□□□□ 0.81
KRT39Q6A163 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.11■□□□□ 0.81
KRT39Q6A163 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.11■□□□□ 0.81
KRT39Q6A163 HMGA1P5-201ENST00000412453 271 ntBASIC20.11■□□□□ 0.81
KRT39Q6A163 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.11■□□□□ 0.81
KRT39Q6A163 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.11■□□□□ 0.81
KRT39Q6A163 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.11■□□□□ 0.81
KRT39Q6A163 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.11■□□□□ 0.81
KRT39Q6A163 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.11■□□□□ 0.81
KRT39Q6A163 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.11■□□□□ 0.81
KRT39Q6A163 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
KRT39Q6A163 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.11■□□□□ 0.81
KRT39Q6A163 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
KRT39Q6A163 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.11■□□□□ 0.81
KRT39Q6A163 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT39Q6A163 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT39Q6A163 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
KRT39Q6A163 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT39Q6A163 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT39Q6A163 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT39Q6A163 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.1■□□□□ 0.81
KRT39Q6A163 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
KRT39Q6A163 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.1■□□□□ 0.81
KRT39Q6A163 AP000593.1-201ENST00000393668 712 ntBASIC20.1■□□□□ 0.81
KRT39Q6A163 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.1■□□□□ 0.81
KRT39Q6A163 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
KRT39Q6A163 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.1■□□□□ 0.81
KRT39Q6A163 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.1■□□□□ 0.81
KRT39Q6A163 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
KRT39Q6A163 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.1■□□□□ 0.81
KRT39Q6A163 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT39Q6A163 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT39Q6A163 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.1■□□□□ 0.81
KRT39Q6A163 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT39Q6A163 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT39Q6A163 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT39Q6A163 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
KRT39Q6A163 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT39Q6A163 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
KRT39Q6A163 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
KRT39Q6A163 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.09■□□□□ 0.81
KRT39Q6A163 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
KRT39Q6A163 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 MYLKP1-201ENST00000509077 1580 ntBASIC20.09■□□□□ 0.81
KRT39Q6A163 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.09■□□□□ 0.81
KRT39Q6A163 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
KRT39Q6A163 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.09■□□□□ 0.81
KRT39Q6A163 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.09■□□□□ 0.81
KRT39Q6A163 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.09■□□□□ 0.81
KRT39Q6A163 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.09■□□□□ 0.81
KRT39Q6A163 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.09■□□□□ 0.81
KRT39Q6A163 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.09■□□□□ 0.81
KRT39Q6A163 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.09■□□□□ 0.81
KRT39Q6A163 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.09■□□□□ 0.81
KRT39Q6A163 AL512604.3-201ENST00000569583 964 ntBASIC20.09■□□□□ 0.81
KRT39Q6A163 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.09■□□□□ 0.81
KRT39Q6A163 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms