Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 LIN28AP1-201ENST00000429574 405 ntBASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 ATP5G1P1-201ENST00000448724 379 ntBASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 AC128688.1-201ENST00000487626 519 ntBASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 FAM87A-204ENST00000613235 858 ntBASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 AC073508.3-201ENST00000619697 1419 ntBASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD3Q3KNS1 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 CA15P1-201ENST00000481698 905 ntBASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 AL445228.2-201ENST00000605589 952 ntBASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTCHD3Q3KNS1 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
PTCHD3Q3KNS1 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 AL357033.4-201ENST00000617703 1807 ntBASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 AC005082.1-201ENST00000413042 2259 ntBASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 AC009113.1-201ENST00000570267 2443 ntBASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms