Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN1P58418 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN1P58418 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN1P58418 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN1P58418 SNORA78-201ENST00000459373 127 ntBASIC16.68■□□□□ 0.26
CLRN1P58418 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
CLRN1P58418 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN1P58418 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN1P58418 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.68■□□□□ 0.26
CLRN1P58418 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN1P58418 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN1P58418 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN1P58418 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN1P58418 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC16.68■□□□□ 0.26
CLRN1P58418 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN1P58418 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
CLRN1P58418 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN1P58418 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.68■□□□□ 0.26
CLRN1P58418 KRT17P2-201ENST00000300992 1314 ntBASIC16.68■□□□□ 0.26
CLRN1P58418 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CLRN1P58418 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN1P58418 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN1P58418 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.67■□□□□ 0.26
CLRN1P58418 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN1P58418 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN1P58418 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
CLRN1P58418 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC16.67■□□□□ 0.26
CLRN1P58418 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CLRN1P58418 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN1P58418 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN1P58418 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN1P58418 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.67■□□□□ 0.26
CLRN1P58418 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.67■□□□□ 0.26
CLRN1P58418 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC16.67■□□□□ 0.26
CLRN1P58418 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.67■□□□□ 0.26
CLRN1P58418 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN1P58418 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN1P58418 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
CLRN1P58418 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN1P58418 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN1P58418 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN1P58418 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN1P58418 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CLRN1P58418 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN1P58418 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN1P58418 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.66■□□□□ 0.26
CLRN1P58418 RNF165-205ENST00000588679 2904 ntBASIC16.66■□□□□ 0.26
CLRN1P58418 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.66■□□□□ 0.26
CLRN1P58418 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN1P58418 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC16.66■□□□□ 0.26
CLRN1P58418 MTMR9LP-203ENST00000426597 1545 ntBASIC16.66■□□□□ 0.26
CLRN1P58418 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
CLRN1P58418 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN1P58418 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.66■□□□□ 0.26
CLRN1P58418 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN1P58418 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN1P58418 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN1P58418 BUB3-202ENST00000368859 667 ntTSL 3 BASIC16.66■□□□□ 0.26
CLRN1P58418 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.66■□□□□ 0.26
CLRN1P58418 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN1P58418 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN1P58418 RBM17P1-201ENST00000453646 1190 ntBASIC16.66■□□□□ 0.26
CLRN1P58418 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.66■□□□□ 0.26
CLRN1P58418 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.66■□□□□ 0.26
CLRN1P58418 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
CLRN1P58418 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN1P58418 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN1P58418 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN1P58418 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.66■□□□□ 0.26
CLRN1P58418 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN1P58418 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN1P58418 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN1P58418 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN1P58418 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.65■□□□□ 0.26
CLRN1P58418 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.65■□□□□ 0.26
CLRN1P58418 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CLRN1P58418 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CLRN1P58418 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN1P58418 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN1P58418 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.65■□□□□ 0.26
CLRN1P58418 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.65■□□□□ 0.26
CLRN1P58418 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN1P58418 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CLRN1P58418 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
CLRN1P58418 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.65■□□□□ 0.26
CLRN1P58418 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.65■□□□□ 0.26
CLRN1P58418 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN1P58418 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.65■□□□□ 0.26
CLRN1P58418 CA15P1-201ENST00000481698 905 ntBASIC16.65■□□□□ 0.26
CLRN1P58418 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CLRN1P58418 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.65■□□□□ 0.26
CLRN1P58418 AP005242.2-201ENST00000580065 1175 ntBASIC16.65■□□□□ 0.26
CLRN1P58418 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.65■□□□□ 0.26
CLRN1P58418 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN1P58418 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN1P58418 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN1P58418 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN1P58418 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN1P58418 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.65■□□□□ 0.26
CLRN1P58418 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms