Protein–RNA interactions for Protein: P56880

CLDN20, Claudin-20, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN20P56880 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.09■□□□□ 0.33
CLDN20P56880 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CLDN20P56880 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.09■□□□□ 0.33
CLDN20P56880 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.09■□□□□ 0.33
CLDN20P56880 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CLDN20P56880 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.09■□□□□ 0.33
CLDN20P56880 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 CCR12P-201ENST00000446203 998 ntBASIC17.09■□□□□ 0.33
CLDN20P56880 CA15P1-201ENST00000481698 905 ntBASIC17.09■□□□□ 0.33
CLDN20P56880 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
CLDN20P56880 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.09■□□□□ 0.33
CLDN20P56880 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CLDN20P56880 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CLDN20P56880 AC116562.4-202ENST00000641738 218 ntBASIC17.09■□□□□ 0.33
CLDN20P56880 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.09■□□□□ 0.33
CLDN20P56880 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CLDN20P56880 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.09■□□□□ 0.33
CLDN20P56880 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CLDN20P56880 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.09■□□□□ 0.33
CLDN20P56880 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CLDN20P56880 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.09■□□□□ 0.33
CLDN20P56880 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN20P56880 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLDN20P56880 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.08■□□□□ 0.33
CLDN20P56880 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLDN20P56880 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLDN20P56880 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CLDN20P56880 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.08■□□□□ 0.33
CLDN20P56880 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.08■□□□□ 0.33
CLDN20P56880 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.33
CLDN20P56880 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLDN20P56880 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLDN20P56880 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.08■□□□□ 0.32
CLDN20P56880 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CLDN20P56880 AC092338.2-201ENST00000568827 1415 ntBASIC17.08■□□□□ 0.32
CLDN20P56880 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.08■□□□□ 0.32
CLDN20P56880 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLDN20P56880 AC007663.1-201ENST00000438948 1240 ntBASIC17.08■□□□□ 0.32
CLDN20P56880 AC128688.1-201ENST00000487626 519 ntBASIC17.08■□□□□ 0.32
CLDN20P56880 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.08■□□□□ 0.32
CLDN20P56880 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.08■□□□□ 0.32
CLDN20P56880 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.08■□□□□ 0.32
CLDN20P56880 FAM87A-204ENST00000613235 858 ntBASIC17.08■□□□□ 0.32
CLDN20P56880 AC005363.2-201ENST00000618631 242 ntBASIC17.08■□□□□ 0.32
CLDN20P56880 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.08■□□□□ 0.32
CLDN20P56880 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.08■□□□□ 0.32
CLDN20P56880 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.08■□□□□ 0.32
CLDN20P56880 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLDN20P56880 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.08■□□□□ 0.32
CLDN20P56880 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
CLDN20P56880 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
CLDN20P56880 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.08■□□□□ 0.32
CLDN20P56880 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
CLDN20P56880 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CLDN20P56880 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLDN20P56880 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.08■□□□□ 0.32
CLDN20P56880 IRX1P1-201ENST00000438849 1838 ntBASIC17.07■□□□□ 0.32
CLDN20P56880 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.07■□□□□ 0.32
CLDN20P56880 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CLDN20P56880 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CLDN20P56880 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLDN20P56880 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLDN20P56880 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.07■□□□□ 0.32
CLDN20P56880 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLDN20P56880 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CLDN20P56880 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLDN20P56880 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLDN20P56880 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLDN20P56880 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLDN20P56880 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLDN20P56880 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.07■□□□□ 0.32
CLDN20P56880 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
CLDN20P56880 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.07■□□□□ 0.32
CLDN20P56880 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLDN20P56880 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLDN20P56880 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLDN20P56880 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CLDN20P56880 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.07■□□□□ 0.32
CLDN20P56880 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.07■□□□□ 0.32
CLDN20P56880 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.07■□□□□ 0.32
CLDN20P56880 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms