Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
PTPN9P43378 KRT18P23-201ENST00000435622 1283 ntBASIC19.37■□□□□ 0.69
PTPN9P43378 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.37■□□□□ 0.69
PTPN9P43378 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.37■□□□□ 0.69
PTPN9P43378 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.37■□□□□ 0.69
PTPN9P43378 AC133561.5-201ENST00000635547 218 ntBASIC19.37■□□□□ 0.69
PTPN9P43378 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
PTPN9P43378 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.37■□□□□ 0.69
PTPN9P43378 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
PTPN9P43378 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.36■□□□□ 0.69
PTPN9P43378 AC009113.1-201ENST00000570267 2443 ntBASIC19.36■□□□□ 0.69
PTPN9P43378 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.36■□□□□ 0.69
PTPN9P43378 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
PTPN9P43378 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
PTPN9P43378 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.36■□□□□ 0.69
PTPN9P43378 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.36■□□□□ 0.69
PTPN9P43378 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.36■□□□□ 0.69
PTPN9P43378 SLC25A3P1-201ENST00000443844 931 ntBASIC19.36■□□□□ 0.69
PTPN9P43378 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.36■□□□□ 0.69
PTPN9P43378 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.36■□□□□ 0.69
PTPN9P43378 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.36■□□□□ 0.69
PTPN9P43378 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
PTPN9P43378 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.36■□□□□ 0.69
PTPN9P43378 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
PTPN9P43378 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.36■□□□□ 0.69
PTPN9P43378 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN9P43378 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN9P43378 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.35■□□□□ 0.69
PTPN9P43378 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
PTPN9P43378 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.35■□□□□ 0.69
PTPN9P43378 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
PTPN9P43378 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN9P43378 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN9P43378 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN9P43378 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.35■□□□□ 0.69
PTPN9P43378 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
PTPN9P43378 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN9P43378 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN9P43378 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN9P43378 ECEL1P3-201ENST00000427961 737 ntBASIC19.35■□□□□ 0.69
PTPN9P43378 AC009947.2-201ENST00000444014 672 ntBASIC19.35■□□□□ 0.69
PTPN9P43378 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN9P43378 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.35■□□□□ 0.69
PTPN9P43378 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.35■□□□□ 0.69
PTPN9P43378 NEK4P2-201ENST00000580004 1012 ntBASIC19.35■□□□□ 0.69
PTPN9P43378 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.35■□□□□ 0.69
PTPN9P43378 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
PTPN9P43378 AC112497.1-201ENST00000624824 639 ntBASIC19.35■□□□□ 0.69
PTPN9P43378 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.35■□□□□ 0.69
PTPN9P43378 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.35■□□□□ 0.69
PTPN9P43378 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.35■□□□□ 0.69
PTPN9P43378 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN9P43378 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN9P43378 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN9P43378 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN9P43378 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN9P43378 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
PTPN9P43378 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
PTPN9P43378 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
PTPN9P43378 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.34■□□□□ 0.69
PTPN9P43378 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN9P43378 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.34■□□□□ 0.69
PTPN9P43378 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
PTPN9P43378 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN9P43378 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN9P43378 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN9P43378 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms