Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA9P31269 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXA9P31269 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA9P31269 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.39■□□□□ 0.69
HOXA9P31269 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA9P31269 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
HOXA9P31269 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA9P31269 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA9P31269 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA9P31269 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA9P31269 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXA9P31269 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.39■□□□□ 0.69
HOXA9P31269 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA9P31269 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA9P31269 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXA9P31269 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXA9P31269 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXA9P31269 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXA9P31269 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXA9P31269 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXA9P31269 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXA9P31269 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXA9P31269 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXA9P31269 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXA9P31269 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXA9P31269 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.38■□□□□ 0.69
HOXA9P31269 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXA9P31269 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.38■□□□□ 0.69
HOXA9P31269 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
HOXA9P31269 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXA9P31269 IGHV3-47-201ENST00000425060 335 ntBASIC19.38■□□□□ 0.69
HOXA9P31269 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
HOXA9P31269 VENTXP7-201ENST00000475503 772 ntBASIC19.38■□□□□ 0.69
HOXA9P31269 KRT18P41-201ENST00000518924 1277 ntBASIC19.38■□□□□ 0.69
HOXA9P31269 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXA9P31269 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.38■□□□□ 0.69
HOXA9P31269 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXA9P31269 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.38■□□□□ 0.69
HOXA9P31269 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXA9P31269 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
HOXA9P31269 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.38■□□□□ 0.69
HOXA9P31269 Z98044.1-201ENST00000632503 1764 ntBASIC19.38■□□□□ 0.69
HOXA9P31269 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.38■□□□□ 0.69
HOXA9P31269 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXA9P31269 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXA9P31269 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.38■□□□□ 0.69
HOXA9P31269 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA9P31269 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
HOXA9P31269 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA9P31269 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA9P31269 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
HOXA9P31269 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA9P31269 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.37■□□□□ 0.69
HOXA9P31269 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA9P31269 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
HOXA9P31269 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA9P31269 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA9P31269 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.37■□□□□ 0.69
HOXA9P31269 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA9P31269 AC009078.2-202ENST00000463353 338 ntBASIC19.37■□□□□ 0.69
HOXA9P31269 AC106795.1-205ENST00000512851 1056 ntBASIC19.37■□□□□ 0.69
HOXA9P31269 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.37■□□□□ 0.69
HOXA9P31269 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HOXA9P31269 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.37■□□□□ 0.69
HOXA9P31269 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.37■□□□□ 0.69
HOXA9P31269 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.37■□□□□ 0.69
HOXA9P31269 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA9P31269 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXA9P31269 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA9P31269 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA9P31269 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA9P31269 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.36■□□□□ 0.69
HOXA9P31269 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA9P31269 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA9P31269 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.36■□□□□ 0.69
HOXA9P31269 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.36■□□□□ 0.69
HOXA9P31269 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.36■□□□□ 0.69
HOXA9P31269 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
HOXA9P31269 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA9P31269 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA9P31269 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA9P31269 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA9P31269 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA9P31269 AP000593.1-201ENST00000393668 712 ntBASIC19.36■□□□□ 0.69
HOXA9P31269 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.36■□□□□ 0.69
HOXA9P31269 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.36■□□□□ 0.69
HOXA9P31269 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.36■□□□□ 0.69
HOXA9P31269 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
HOXA9P31269 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.36■□□□□ 0.69
HOXA9P31269 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA9P31269 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA9P31269 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.36■□□□□ 0.69
HOXA9P31269 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA9P31269 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.35■□□□□ 0.69
HOXA9P31269 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXA9P31269 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXA9P31269 LINC00167-201ENST00000530583 1419 ntBASIC19.35■□□□□ 0.69
HOXA9P31269 KRT8P50-201ENST00000562022 1438 ntBASIC19.35■□□□□ 0.69
HOXA9P31269 AL353692.3-201ENST00000407031 1396 ntBASIC19.35■□□□□ 0.69
HOXA9P31269 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms