Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC21.62■■□□□ 1.05
CTDNEP1O95476 AC135776.1-201ENST00000319817 2481 ntBASIC21.62■■□□□ 1.05
CTDNEP1O95476 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTDNEP1O95476 ESPNP-201ENST00000270691 2015 ntBASIC21.62■■□□□ 1.05
CTDNEP1O95476 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.61■■□□□ 1.05
CTDNEP1O95476 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTDNEP1O95476 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.61■■□□□ 1.05
CTDNEP1O95476 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTDNEP1O95476 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CTDNEP1O95476 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC21.61■■□□□ 1.05
CTDNEP1O95476 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.61■■□□□ 1.05
CTDNEP1O95476 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTDNEP1O95476 TSPY14P-201ENST00000303979 915 ntBASIC21.61■■□□□ 1.05
CTDNEP1O95476 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
CTDNEP1O95476 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.61■■□□□ 1.05
CTDNEP1O95476 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC21.61■■□□□ 1.05
CTDNEP1O95476 TSPY17P-201ENST00000450329 467 ntBASIC21.61■■□□□ 1.05
CTDNEP1O95476 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC21.61■■□□□ 1.05
CTDNEP1O95476 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.61■■□□□ 1.05
CTDNEP1O95476 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
CTDNEP1O95476 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CTDNEP1O95476 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.61■■□□□ 1.05
CTDNEP1O95476 MYC-208ENST00000641036 567 ntBASIC21.61■■□□□ 1.05
CTDNEP1O95476 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC21.61■■□□□ 1.05
CTDNEP1O95476 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
CTDNEP1O95476 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTDNEP1O95476 AC034236.2-201ENST00000606662 1610 ntBASIC21.61■■□□□ 1.05
CTDNEP1O95476 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CTDNEP1O95476 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
CTDNEP1O95476 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.61■■□□□ 1.05
CTDNEP1O95476 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CTDNEP1O95476 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
CTDNEP1O95476 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTDNEP1O95476 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTDNEP1O95476 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTDNEP1O95476 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CTDNEP1O95476 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTDNEP1O95476 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.6■■□□□ 1.05
CTDNEP1O95476 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
CTDNEP1O95476 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
CTDNEP1O95476 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTDNEP1O95476 CD276-201ENST00000318424 2738 ntTSL 5 BASIC21.6■■□□□ 1.05
CTDNEP1O95476 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTDNEP1O95476 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTDNEP1O95476 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTDNEP1O95476 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC21.6■■□□□ 1.05
CTDNEP1O95476 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTDNEP1O95476 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTDNEP1O95476 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.6■■□□□ 1.05
CTDNEP1O95476 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC21.6■■□□□ 1.05
CTDNEP1O95476 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.6■■□□□ 1.05
CTDNEP1O95476 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.6■■□□□ 1.05
CTDNEP1O95476 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC21.6■■□□□ 1.05
CTDNEP1O95476 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.6■■□□□ 1.05
CTDNEP1O95476 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CTDNEP1O95476 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTDNEP1O95476 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTDNEP1O95476 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC21.6■■□□□ 1.05
CTDNEP1O95476 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.6■■□□□ 1.05
CTDNEP1O95476 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CTDNEP1O95476 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
CTDNEP1O95476 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.59■■□□□ 1.05
CTDNEP1O95476 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CTDNEP1O95476 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CTDNEP1O95476 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CTDNEP1O95476 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CTDNEP1O95476 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC21.59■■□□□ 1.05
CTDNEP1O95476 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC21.59■■□□□ 1.05
CTDNEP1O95476 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CTDNEP1O95476 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CTDNEP1O95476 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.59■■□□□ 1.05
CTDNEP1O95476 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
CTDNEP1O95476 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CTDNEP1O95476 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CTDNEP1O95476 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CTDNEP1O95476 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
CTDNEP1O95476 NOC2LP1-202ENST00000452600 2235 ntBASIC21.58■■□□□ 1.05
CTDNEP1O95476 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CTDNEP1O95476 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
CTDNEP1O95476 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC21.58■■□□□ 1.05
CTDNEP1O95476 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CTDNEP1O95476 WWOX-216ENST00000569818 525 ntBASIC21.58■■□□□ 1.05
CTDNEP1O95476 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21.58■■□□□ 1.05
CTDNEP1O95476 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC21.58■■□□□ 1.05
CTDNEP1O95476 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.58■■□□□ 1.05
CTDNEP1O95476 ABALON-201ENST00000629058 1903 ntBASIC21.58■■□□□ 1.04
CTDNEP1O95476 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CTDNEP1O95476 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CTDNEP1O95476 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CTDNEP1O95476 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
CTDNEP1O95476 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
CTDNEP1O95476 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CTDNEP1O95476 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.58■■□□□ 1.04
CTDNEP1O95476 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.57■■□□□ 1.04
CTDNEP1O95476 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CTDNEP1O95476 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CTDNEP1O95476 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21.57■■□□□ 1.04
CTDNEP1O95476 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTDNEP1O95476 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTDNEP1O95476 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms