Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SIX3O95343 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
SIX3O95343 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SIX3O95343 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.25■□□□□ 0.51
SIX3O95343 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX3O95343 ABALON-201ENST00000629058 1903 ntBASIC18.25■□□□□ 0.51
SIX3O95343 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX3O95343 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.25■□□□□ 0.51
SIX3O95343 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.25■□□□□ 0.51
SIX3O95343 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX3O95343 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SIX3O95343 PRORSD1P-201ENST00000295112 541 ntBASIC18.25■□□□□ 0.51
SIX3O95343 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX3O95343 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
SIX3O95343 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.25■□□□□ 0.51
SIX3O95343 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX3O95343 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.25■□□□□ 0.51
SIX3O95343 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.25■□□□□ 0.51
SIX3O95343 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.25■□□□□ 0.51
SIX3O95343 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.25■□□□□ 0.51
SIX3O95343 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.25■□□□□ 0.51
SIX3O95343 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX3O95343 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SIX3O95343 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX3O95343 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.25■□□□□ 0.51
SIX3O95343 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SIX3O95343 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.25■□□□□ 0.51
SIX3O95343 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.25■□□□□ 0.51
SIX3O95343 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
SIX3O95343 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX3O95343 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.25■□□□□ 0.51
SIX3O95343 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX3O95343 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX3O95343 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX3O95343 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SIX3O95343 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX3O95343 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.24■□□□□ 0.51
SIX3O95343 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SIX3O95343 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.24■□□□□ 0.51
SIX3O95343 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX3O95343 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.24■□□□□ 0.51
SIX3O95343 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SIX3O95343 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SIX3O95343 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX3O95343 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.24■□□□□ 0.51
SIX3O95343 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.24■□□□□ 0.51
SIX3O95343 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.24■□□□□ 0.51
SIX3O95343 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.24■□□□□ 0.51
SIX3O95343 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.24■□□□□ 0.51
SIX3O95343 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SIX3O95343 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.24■□□□□ 0.51
SIX3O95343 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.24■□□□□ 0.51
SIX3O95343 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.24■□□□□ 0.51
SIX3O95343 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX3O95343 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SIX3O95343 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX3O95343 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SIX3O95343 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SIX3O95343 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SIX3O95343 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX3O95343 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX3O95343 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SIX3O95343 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX3O95343 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX3O95343 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX3O95343 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX3O95343 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SIX3O95343 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.23■□□□□ 0.51
SIX3O95343 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SIX3O95343 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.23■□□□□ 0.51
SIX3O95343 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SIX3O95343 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX3O95343 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX3O95343 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX3O95343 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SIX3O95343 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
SIX3O95343 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SIX3O95343 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SIX3O95343 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.23■□□□□ 0.51
SIX3O95343 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.23■□□□□ 0.51
SIX3O95343 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.23■□□□□ 0.51
SIX3O95343 CD177P1-201ENST00000606252 935 ntBASIC18.23■□□□□ 0.51
SIX3O95343 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX3O95343 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX3O95343 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX3O95343 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.23■□□□□ 0.51
SIX3O95343 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.23■□□□□ 0.51
SIX3O95343 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SIX3O95343 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.23■□□□□ 0.51
SIX3O95343 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SIX3O95343 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
SIX3O95343 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.22■□□□□ 0.51
SIX3O95343 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.22■□□□□ 0.51
SIX3O95343 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX3O95343 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
SIX3O95343 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX3O95343 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
SIX3O95343 FSCN1P1-201ENST00000568912 1481 ntBASIC18.22■□□□□ 0.51
SIX3O95343 AC008556.1-201ENST00000610908 2040 ntBASIC18.22■□□□□ 0.51
SIX3O95343 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms